Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0969 ATGGAGGCGCCGCCATTTGCTTCTCCTgcttcctcttcctctctcttttctcttcgcAACAAACCACTCTCATCCCCGAGATTCTCCCATTTCGGAAATGCCAAACAATCGAGAAGCTTCTCGGTTCGCGCTTCCTCTTCTGGGGATTCTGTCGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCTATCAGATTCCTGGGGTTTGACATCAAAGATgtGCAAACTCCGCAAGATATTTTGAATGCAAGTCGGTTAGTTTTTCCGGGTGTTGGAGCATTTGCTGCTGCCATGGAGGTGTTGAGCAAAACTGGAATGGATGAAGCACTATGTTCATATATTGAAAAGGATCGCCCATTTTTAGGCATTTGTCTTGGACTTCAACTGCTTTTTGAATCTAGTGAAGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGAACTGTTGGGCGATTTGACTCATCAAATGGTTTTAGAGTACCACATATTGGCTGGAATGCTTTACAAATCACATCGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTtCAGATGACAACAATGAGTGGATATCCTCCACCTGCGATTATGGTGACAAATTTATAGCATctattaaaagaggaaatgtGCATGCTGTTCAATTCCATCCAGAGAAGAGCGGAGATGTTGGTCTCTCTATTTTAAGGAGATTCTTGAATCCAAAGTCAGACATGGCAAAGAAACCTGGGGAAGGCAAAGCTTCAAAACTTGCAAAAAGGGTGATTGCTTGTCTTGATGTGAGAGCAAATGATAAGGGGGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAGCATACAGAAGAGAAAGAGGTAAGGAATCTTGGCAAGCCAGTTGATCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACTGGATTTCGCGACTTCCCTCTTGGTGATTTACCGATGTTGCAGGTATTGCAATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGGGGAGGAATTAGAGATTTCACAGATTCAAATGGAAGGTACTATTCTAGTTTGGAGGTTGCTTCAGAATATTTTAGGTCTGGGGCTGATAAGATTTCCATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATATTTAAGAACCGGAGTAAAGACTGGGAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCTCGTAGAGTGTACGTAAAGGATCCTAGTGATGTGCAATTAAAGACCATAAGGGTTTCAAGTCTAGGTGAAGATCTTGCttctttgttttcctttattttatattgtctcTGA 1419 0.4024 MEAPPFASPASSSSLFSLRNKPLSSPRFSHFGNAKQSRSFSVRASSSGDSVVTLLDYGAGNVRSVRNAIRFLGFDIKDVQTPQDILNASRLVFPGVGAFAAAMEVLSKTGMDEALCSYIEKDRPFLGICLGLQLLFESSEENGPVKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITSDSGILDDVGNHHVYFVHSYRAMPSDDNNEWISSTCDYGDKFIASIKRGNVHAVQFHPEKSGDVGLSILRRFLNPKSDMAKKPGEGKASKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTEEKEVRNLGKPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLQYTSENVFVPLTVGGGIRDFTDSNGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVKDPSDVQLKTIRVSSLGEDLASLFSFILYCL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0969 472 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 52 250 IPR010139 GO:0000105|GO:0016763
Ssu9g0969 472 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 63 445 - -
Ssu9g0969 472 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 51 259 - -
Ssu9g0969 472 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 51 252 IPR010139 GO:0000105|GO:0016763
Ssu9g0969 472 Gene3D Aldolase class I 273 470 IPR013785 -
Ssu9g0969 472 SUPERFAMILY Ribulose-phoshate binding barrel 267 440 IPR011060 -
Ssu9g0969 472 CDD GATase1_IGP_Synthase 52 250 IPR010139 GO:0000105|GO:0016763
Ssu9g0969 472 Pfam Glutamine amidotransferase class-I 54 249 IPR017926 -
Ssu9g0969 472 Pfam Histidine biosynthesis protein 271 441 IPR006062 GO:0000105
Ssu9g0969 472 Gene3D - 48 272 IPR029062 -
Ssu9g0969 472 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 63 445 - -
Ssu9g0969 472 SUPERFAMILY Class I glutamine amidotransferase-like 51 251 IPR029062 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0969 K01663 - gmx:100500353 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0969 9 39572218 39579117 Ssu9g0969 9 39572218 39579117 ECH