Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1574 ATGTTTGGTGTCATAAGGCGTAGGGTTGCTTCTGGCAGCCCATCTCCTTTGTTTCTAGGTCAGTCAGTGCAGAAATTACGGTCTGGCCTGTCTGTTACTGCAAGAGCTTCTTCTATTGTGGAAAAACAGATTGCATTTCATTCAGGAGAATGTGGAAATGTCCGGAGTTTGTGTCATATATCACGTGGGTCCTGGATTAAGTCAAAGCCTATGAGGGAGGTTTTTCGTCAAGAGGCTACCATGCAAACATGGAGGCGTCCATTTTCTTCAGACAATGGAGATTCGGTTGATGTTGTGGTCCCTCCATTGGCTGAGTCTATTTCTGATGGAACTCTGGCGAAATTTTTGAAGAGGCCAGGTGACAGGGTTAATATTGATGAACCAATAGCTCAAATTGAAACAGATAAGGTGACAATTGATGTTTCTAGCCCTGAGTCAGGTGTGATTTTTAAGCTTCTAGTCAATGAAGGGGATACCGTTGAGCCAGGTAACAAGATCGCAATCATTTCAAGGTCTGCTGATGCTACAACTCACGTTGCACCATCTGAGACTACACCTGAGAAAGCTGCTCCTCAGCCAACCCAAAAGATTAGTGAAGAGAAGAAAGCACCTAAAGCTGAAACGTCCCCTGTTACAGAGAAGCCCAAGGCACCTCCTGCTCCACAGAGTTCTCACTCTGAGCCACAGCTCCCCCCTAAGGAAAGAGAAAGACGAGTTCCTATGACAAGGCTTCGGAAACGGGTTGCCACACGGTTGAAAGATTCCCAAAACACATTTGCTATGCTGACAACATTCAACGAAGTTGATATGACTAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGGCTCATGTCCGGGTTTATCAAAGCTGCTGTCAATGCACTCCAGTATCAGCCGATTGTAAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTACATTGATATCAGTGTGGCTGTTGGTACTTCAAAGGGCCTTGTGGTGCCAGTTATCCGCAATGCCGATACCATGAACTTTGCGGAAATAGAAAAGCAGATCAATACTTATGCAAAAAAGGCAACTAATGGAACTTTATCAATTGATGAGATGGCTGGAGGTACTCTTACAATATCCAATGGTGGCGTTTATGGGAGTCTTTTGAGTACCCCTATTATCAACCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGCCGACCAATGGTTGTGGGAGGAAATGTTGTGCCAAGGCCAATGATGTATGTTGCTCTAACGTATGATCATAGGATTATTGATGGAAGAGAGGCAGTGTTCTTTTTACGACGTATCAAAGATATTGTTGAGGATCCACGCAGGCTTCTGCTGGACATATGA 1398 0.4428 MFGVIRRRVASGSPSPLFLGQSVQKLRSGLSVTARASSIVEKQIAFHSGECGNVRSLCHISRGSWIKSKPMREVFRQEATMQTWRRPFSSDNGDSVDVVVPPLAESISDGTLAKFLKRPGDRVNIDEPIAQIETDKVTIDVSSPESGVIFKLLVNEGDTVEPGNKIAIISRSADATTHVAPSETTPEKAAPQPTQKISEEKKAPKAETSPVTEKPKAPPAPQSSHSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISVAVGTSKGLVVPVIRNADTMNFAEIEKQINTYAKKATNGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1574 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 465 - -
Lal18g1574 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 465 - -
Lal18g1574 465 CDD lipoyl_domain 96 169 - -
Lal18g1574 465 SUPERFAMILY CoA-dependent acyltransferases 235 464 - -
Lal18g1574 465 Gene3D - 94 172 - -
Lal18g1574 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 120 149 IPR003016 -
Lal18g1574 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 235 463 IPR001078 GO:0016746
Lal18g1574 465 MobiDBLite consensus disorder prediction 229 244 - -
Lal18g1574 465 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 213 464 IPR006255 GO:0004149|GO:0006099|GO:0045252
Lal18g1574 465 SUPERFAMILY Single hybrid motif 96 186 IPR011053 -
Lal18g1574 465 MobiDBLite consensus disorder prediction 194 209 - -
Lal18g1574 465 MobiDBLite consensus disorder prediction 175 192 - -
Lal18g1574 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 95 170 IPR000089 -
Lal18g1574 465 MobiDBLite consensus disorder prediction 172 244 - -
Lal18g1574 465 Pfam Biotin-requiring enzyme 97 169 IPR000089 -
Lal18g1574 465 Gene3D - 221 461 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1574 Lal-Chr18 17363485 17370664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1574 52 463 Acyl Lipid Metabolism Gene Families AT3G13930 29.630 1.12e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1574 K00658 - gmx:100799149 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1574 18 17363485 17370664 Lal22g0072 22 424933 431372 ECH
Lal18g1574 18 17363485 17370664 Lal18g1574 18 17363485 17370664 ECH
Lal18g1574 18 17363485 17370664 Lal22g0072 22 424933 431372 LSH
Lal18g1574 18 17363485 17370664 Lal6g0071 6 425228 430384 LSH