Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01878 ATGTTTGGCGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGTTGCTAGGTCAGTCAGCTCAGAAAATTCGGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGCGGAAAAAGAGCTTGCATTTCGCTCAGGCGGATGTGGATTTGTCCGGAACTTCAGTCATATAACACCTGGATGCTGGATTAATTCAAAGCCTATGAGGGTGGTCTTGCATCCAGAGGCAACCGTTCGAACATGGGGGCGTCTGTTTTCTTCAGACAGTGGAGATACGGTTGATGTTGTGGTCCCTCCTTTGGCTGAATCTATCTCTGATGGAACTCTGGCACAATTTTTGAAGAGGCCTGGTGACAGGGTTAATGCTGACGAGCCAATTGCTCAAATTGAAACAGATAAGGTTACAATTGATGTTTCAAGTCCTGAGTCAGGTGTGATTCTGAAGCTTCTAGCCAATGAAGGCGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGATGCAACTCACGTTGCCCCATCTGAGACTACATCTGAGAAGAAAGCTGCTCCTCAGCCAACCCAAAAGGTTAGCGAGGAGAAGAAAGCTCCCAAAGTTGAAACTCCTCCTGCTAAAGAGAAGCCCAAAGCACCTCCTGCCACTCTGAAGTCTCCCACTGAGCCGCAGCTTCCTCCTAAAGAAAGAGAAAGACGAGTTCCTATGACAAGGCTTCGGAAACGTGTTGCTACACGGCTGAAAGACTCCCAAAACACATTTGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGGCTTATGTCTGGCTTTGTCAAAGCTGCTGTCAATGCACTCCAACATCAGCCCATTGTCAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTATATAGATATCAGCATAGCTGTTGGTACTCCGAAGGGCCTTGTTGTGCCGGTTATCCGCAATGCTGATACCATGAACTTTGCTGATATAGAAAAGCAGATCAATGCTTTTGCAAAGAAGGCAAATGATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCCAATGGTGGTGTTTATGGAAGCCTTTTGAGTACCCCTATTATCAACCCTCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGCCGTCCGACAGTTGTTGGAGGAAATATTGTCCCTAGACCAATGATGTACGTGGCTCTAACATATGACCATAGAATTATTGATGGAAGAGAGGCAGTGTTCTTTCTGCGACGCATCAAAGATATTGTGGAGGATCCTCGCAGGCTTCTGCTCGACATATGA 1398 0.4571 MFGVVRRRVASGSPSPWLLGQSAQKIRSGPSVSARASSIAEKELAFRSGGCGFVRNFSHITPGCWINSKPMRVVLHPEATVRTWGRLFSSDSGDTVDVVVPPLAESISDGTLAQFLKRPGDRVNADEPIAQIETDKVTIDVSSPESGVILKLLANEGDTVEPGNKIAIISRSADATHVAPSETTSEKKAAPQPTQKVSEEKKAPKVETPPAKEKPKAPPATLKSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPTVVGGNIVPRPMMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01878 465 Gene3D - 94 172 - -
Pumo9g01878 465 Pfam Biotin-requiring enzyme 97 169 IPR000089 -
Pumo9g01878 465 SUPERFAMILY Single hybrid motif 95 186 IPR011053 -
Pumo9g01878 465 CDD lipoyl_domain 96 169 - -
Pumo9g01878 465 MobiDBLite consensus disorder prediction 193 212 - -
Pumo9g01878 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 69 464 - -
Pumo9g01878 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 95 170 IPR000089 -
Pumo9g01878 465 MobiDBLite consensus disorder prediction 176 192 - -
Pumo9g01878 465 MobiDBLite consensus disorder prediction 176 239 - -
Pumo9g01878 465 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 228 463 - -
Pumo9g01878 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 235 463 IPR001078 GO:0016746
Pumo9g01878 465 NCBIfam dihydrolipoyllysine-residue succinyltransferase 211 464 IPR006255 GO:0004149|GO:0006099|GO:0045252
Pumo9g01878 465 SUPERFAMILY CoA-dependent acyltransferases 235 464 - -
Pumo9g01878 465 Gene3D - 221 461 IPR023213 -
Pumo9g01878 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 120 149 IPR003016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01878 Pumo-Chr9 47910960 47917561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01878 97 463 Acyl Lipid Metabolism Gene Families AT1G54220 28.868 3.12e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01878 K00658 - gmx:100799149 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01878 9 47910960 47917561 Pumo9g01878 9 47910960 47917561 ECH