Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1755 ATGTTTGGCGTCATAAGGCGAAGGGTTGCTTCTGGCAACCCATCTCCTTTGTTTCTAGGTCAGTCAGTTCATAAGATCTGGTCTGGCCCATCAGTTCCTGCTAGAGTTTCTTCCATTTTGGAAAAAGAGATTGCATTTCATTCAGGAGGATGTGGAAACCTCAGGAATTTCTGTCACATAACACCTGGATGCTGGATTAATTCAAAGCCTATGAGGGAGCATTTTCATCAGGATGCTACCATGCAAACATGGAGGCGTCCATTTTCTTCAGAAAGTGGAGATACGGTTGATGTTGTGGTCCCTCCTTTGGCTGAATCTATTGCTGATGGAACTCTGGCAAAATTTTTGAAGAGGCCTGGTGACAGAGTTAATGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTGACCATTGATGTTTCAAGTCCCGAGTCAGGTGTGATTGTGAAGCTTCTAGCAAGTGAAGGGGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGATGCTACTCATGTTGCCCCATCTGAGACTACATCTGGGAAAGCTGCTCCTCAGTCTGAGAAAGCTGCTCCTCAGTCGACCCCTCAAAAGATTAGTGAGGAGAAGAAGGCAACCAGAGTTGAAGCTGCTCCTACTGCAGAGAAACCCAAAGCTCCTCCTGCTTCACGGAGCTCACCCACCGAGCCCCAGCTTCCCCCTAAGGAAAGAGAAAGACGAGTTCCAATGACAAGGCTTCGGAAACGAGTTGCTACACGGTTGAAAGATTCCCAGAACACATTTGCTATGCTGACCACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCTGGGTTTGTCAAAGCTGCTGTCAATGCACTCCAGTATCAGCCAATCGTAAATGCTGTTATTGATGGGGATGATATTATATACAGAGATTATATTGATATCAGCATAGCTGTTGGTACCCCAAAGGGCCTTGTTGTGCCAGTTATCCGCAACGCTGATACCATGAACTTTGCTGATATAGAAAAGCAGATCAATGCTTTTGCAAAGAAGGCAAATGAAGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCCAATGGTGGTGTTTATGGAAGCCTTTTGAGTACCCCTATCATCAACCCCCCCCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGCCGTCCAATGGTTGTTGGAGGAAATATTGTCCCAAGGCCAATGATGTATGTTGCTCTAACATATGACCATAGAATAATTGATGGAAGAGAGGCAGTATTCTTCCTGCGACGCATCAAAGATATTGTGGAGGATCCTCGCAGGCTTCTGCTTGACATATGA 1419 0.4454 MFGVIRRRVASGNPSPLFLGQSVHKIWSGPSVPARVSSILEKEIAFHSGGCGNLRNFCHITPGCWINSKPMREHFHQDATMQTWRRPFSSESGDTVDVVVPPLAESIADGTLAKFLKRPGDRVNVDEPIAQIETDKVTIDVSSPESGVIVKLLASEGDTVEPGNKIAIISRSADATHVAPSETTSGKAAPQSEKAAPQSTPQKISEEKKATRVEAAPTAEKPKAPPASRSSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFVKAAVNALQYQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINAFAKKANEGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNIVPRPMMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1755 472 MobiDBLite consensus disorder prediction 176 204 - -
Apr9g1755 472 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 242 470 IPR001078 GO:0016746
Apr9g1755 472 Gene3D - 227 468 IPR023213 -
Apr9g1755 472 CDD lipoyl_domain 96 169 - -
Apr9g1755 472 SUPERFAMILY CoA-dependent acyltransferases 242 471 - -
Apr9g1755 472 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 96 471 IPR006255 GO:0004149|GO:0006099|GO:0045252
Apr9g1755 472 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 472 - -
Apr9g1755 472 SUPERFAMILY Single hybrid motif 95 186 IPR011053 -
Apr9g1755 472 Pfam Biotin-requiring enzyme 97 169 IPR000089 -
Apr9g1755 472 MobiDBLite consensus disorder prediction 236 250 - -
Apr9g1755 472 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 120 149 IPR003016 -
Apr9g1755 472 Gene3D - 94 172 - -
Apr9g1755 472 ProSiteProfiles Biotinyl/lipoyl domain profile. 95 170 IPR000089 -
Apr9g1755 472 MobiDBLite consensus disorder prediction 171 250 - -
Apr9g1755 472 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1755 Apr-Chr9 26612088 26618917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1755 97 470 Acyl Lipid Metabolism Gene Families AT1G54220 28.604 2.35e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1755 K00658 - gmx:100799149 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1755 9 26612088 26618917 Apr9g1755 9 26612088 26618917 ECH