Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0071 ATGTTTGGTATCATTAGGCGAAGGGTTGCTTCTGGCACCCCATCTCCTTTGTTTCTAGGTCAGTCAGTGCAGAAATTCCGGTCTGGCTCATCAGTTCCTGCAACAGTTTCTTCTATTGTGGAAAAGGAGATTGATTTTCATTCAAGAGGATGTGAAAATGTCCGGAGCTTCTGTCATATATCATCTGGATGCTGGATTAATTCAAAGGCTACGAGGGAGGTTTTTTGTCCAGAGATGCAAATATGGAGGCGTCCATTTTCTTCAGACAGTGGAGATTCGGTTGATGTTGTTGTCCCTCCGTTGGCTGAGTCTATTTCTGATGGAACTCTGGCGAAATTTTTGAAGAGGCCTGGTGACAGGGTTAATATTGATGAACCAATAGCTCAAATTGAAACAGATAAGGTCACAATTGATGTTTCTAGCCCTGAGTCAGGTGTGATTCTGAAGCTTCTAGTCAATGAAGGGGATACTGTTGAGCCCGGTAACAAGATAGCAATAATTTCAAGGTCTGCTGATGCTACAACTCATGTTGCCCCATCTGAGGCTACACCTGAAAGAGCTACTCCTCAGCCAACCCAAAAGATTAGTGAAGAAAAGAAAGCACCTAAAGCTGAAGCTGCATCTGTTACAGAGAAGCCCAAGGCACCTCCTGCTCCACATAGCTCTCACTCTGAGCCACAGCTTCCCCCGAAGGAAAGAGAAAGACGAGTTCCTATGACAAGGCTTCGGAAACGAGTTGCCACAAGGTTGAAAGATTCCCAAAACACATTTGCTTTGCTGACAACATTCAACGAAGTCGATATGACAAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTTTTGAAAAGCATGGAGTCAAATTGGGTCTTATGTCCGGGTTTATCAAAGCTGCTGTCAATGCACTCCAGTATCAACCTATTGTAAATGCAGTCATTGATGGGGATGATATCATATACAGAGATTACGTAGATATCAGCGTTGCTGTTGGTACTTCAAAGGGCCTTGTGGTGCCAGTTATCCGCAATGCTGATACCATGAACTTTGCGGATATAGAAAAGCAGATCAATACTTTTGCAAAGAAGGCAAATGATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCCAATGGTGGTGTTTATGGGAGCCTTTTGAGTACCCCTATTATCAACCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGTCGACCAATGGTTGTGGGAGGAAATGTTGTGCCAAGGCCAATGATGTACCTTGCTCTAACATATGATCATAGAATTATTGATGGAAGAGAGGCAGTGTTCTTTTTGCGACGCATCAAAGATATTGTTGAGGATCCACGCAGGCTTCTTCTAGACATATGA 1392 0.4346 MFGIIRRRVASGTPSPLFLGQSVQKFRSGSSVPATVSSIVEKEIDFHSRGCENVRSFCHISSGCWINSKATREVFCPEMQIWRRPFSSDSGDSVDVVVPPLAESISDGTLAKFLKRPGDRVNIDEPIAQIETDKVTIDVSSPESGVILKLLVNEGDTVEPGNKIAIISRSADATTHVAPSEATPERATPQPTQKISEEKKAPKAEAASVTEKPKAPPAPHSSHSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRADYKDAFFEKHGVKLGLMSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYVDISVAVGTSKGLVVPVIRNADTMNFADIEKQINTFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYLALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0071 463 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 233 461 IPR001078 GO:0016746
Lal6g0071 463 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 196 462 IPR006255 GO:0004149|GO:0006099|GO:0045252
Lal6g0071 463 Pfam Biotin-requiring enzyme 95 167 IPR000089 -
Lal6g0071 463 ProSiteProfiles Biotinyl/lipoyl domain profile. 93 168 IPR000089 -
Lal6g0071 463 SUPERFAMILY CoA-dependent acyltransferases 233 462 - -
Lal6g0071 463 MobiDBLite consensus disorder prediction 192 207 - -
Lal6g0071 463 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 463 - -
Lal6g0071 463 Gene3D - 219 459 IPR023213 -
Lal6g0071 463 SUPERFAMILY Single hybrid motif 94 184 IPR011053 -
Lal6g0071 463 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 118 147 IPR003016 -
Lal6g0071 463 MobiDBLite consensus disorder prediction 169 241 - -
Lal6g0071 463 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 463 - -
Lal6g0071 463 MobiDBLite consensus disorder prediction 226 241 - -
Lal6g0071 463 CDD lipoyl_domain 94 167 - -
Lal6g0071 463 Gene3D - 92 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0071 Lal-Chr6 425228 430384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0071 66 461 Acyl Lipid Metabolism Gene Families AT1G54220 27.991 2.03e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0071 K00658 - gmx:100799149 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0071 6 425228 430384 Lal6g0071 6 425228 430384 ECH
Lal18g1574 18 17363485 17370664 Lal6g0071 6 425228 430384 LSH
Lal22g0072 22 424933 431372 Lal6g0071 6 425228 430384 LSH