Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02727 ATGGAGGCGGCACCATCCTTTTCTGTTTCGCGCCTCGGAAGCTTCTCTCTTGAGTCGTCTTCTTCGTCAACTCTTTTCCGGAGCTCTTCTTCTTTCCTATTTCTTCGCAACAGAATTGCCTTCAGAAATTATTCTCATTATGCCAATGACAGCAAGTCCATAAGCTTATCAGTTCGTGCCTCTTCTTCTGGGGATTCTGTTGTGACTTTGCTCGATTATGGTGCTGGTAATGTTCGAAGTGTTAGGAATGCTATCAGGCGCCTCGGCTTTGACATTAAAGATGTGAGAACTCCggaagatattttaaatgcaAATCGCCTAATCTTTCCAGGTGTTGGAGCATTTGGGTCTGCCATGGAAGTGTTATACAAGACTCGGATGGCTGAAGCACTACGAACATATATTGAGAAGGATCGTCCACTTTTAGCCATTTGCCTTGGACTTCAGCTGCTTTTTGAATCTAGCGAGGAGAATGGGCCAGTAAAAGGTCTAGGCTTAATACCTGGAACTGTTGGGCGATTTAACTCATCAAATGGTTTAAGAGTACCTCATATTGGTTGGAATGCTTTGGAAATCACAAGGGACTCAGGAATTTTGGATGACATTCGAAACCGCCATGTCTATTTTGTGCACTCTTATCGTGCCATACCATCAGATGACAACAAAGAGTGGGTATCCTCGACCTGCAACTATGGTGACAAATTTATAGCATCTATTAGTAGAGGAAATGTGCATGCAGTTCAATTCCATCCAGAAAAGAGTGGAGatGTTGGTCTTTCCATTTTGAGAAGATTCTTGTATCCAAAATCAAACTTGACAAAGATGCCTGATCAAGGGAAAGCTTCAAAACTTGCAAAAAGGATTATTGCTTGTCTTGATGTGAGGACAAATGATAAAGGAGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTGAGAGAACAGACAAAAGATAAAGAGGTCAGGACTCTTGGCAAGCCAGTTGAGCTTGCTGGACAATACTATGTAGATGGAGCTGATGAGGTCAGCTTTCTGAACATCACTGGTTTCCGCGACTTCCCTCTTGGTGATTTGCCCATGTTGCAGGTATTGCGGTATGCAtcagaaaatgtttttgtaCCCTTAACAGTTGGAGGTGGAATCAGAGACTTCACCGATTCAAATGGAAGGCACTATTCTAGTTTGGAAGTTGCTTCAGAGTATTTTCGATCTGGGGCTGACAAGATTTCAATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATACATAAGAACTGGAGTTAAGACAGGGAAAAGCAGCTTAGAGCAAATATCTAGAGTTTATGGGAATCAGGCTGTCGTTGTCAGTATTGATCCTCGAAGAATATATGTAAAGAATCCCGATGATGTAGAATTCAAAACCACAAGAGTGTCAAGTCAAGGTCCAAATGGAGAAGCATATGCCTGGTACCAGTGTACGGTTAATGGAGGACGAGAAGGCCGACCAATTGGTGCTTATGAGCTAGCAAAAGCAGTTGAAGAGCTTGGTGCTGGAGAAATACTCCTTAACTGCATTGACTGTGATGgtCAAGGGAAAGGATTTGATATAGATTTGATCAAGTTGATCTCAGATGCTGTAAGTATCCCTGTGATTGCAAGTAGTGGTGCTGGTGCTGCTGAACACTTCTCAGAGGTGTTTGCTAAAACGAATGCCTCTGCTGCGCTGGCTGCCGGTATTTTTCACAGAAAGGAGGTTCCTATACCGTTAGTAAAGGAGCACTTGTTGAAGGAAGGTATTGAAGTCCGAATTTG 1790 0.4223 MEAAPSFSVSRLGSFSLESSSSSTLFRSSSSFLFLRNRIAFRNYSHYANDSKSISLSVRASSSGDSVVTLLDYGAGNVRSVRNAIRRLGFDIKDVRTPEDILNANRLIFPGVGAFGSAMEVLYKTRMAEALRTYIEKDRPLLAICLGLQLLFESSEENGPVKGLGLIPGTVGRFNSSNGLRVPHIGWNALEITRDSGILDDIRNRHVYFVHSYRAIPSDDNKEWVSSTCNYGDKFIASISRGNVHAVQFHPEKSGDVGLSILRRFLYPKSNLTKMPDQGKASKLAKRIIACLDVRTNDKGDLVVTKGDQYDVREQTKDKEVRTLGKPVELAGQYYVDGADEVSFLNITGFRDFPLGDLPMLQVLRYASENVFVPLTVGGGIRDFTDSNGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYIRTGVKTGKSSLEQISRVYGNQAVVVSIDPRRIYVKNPDDVEFKTTRVSSQGPNGEAYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIDLIKLISDAVSIPVIASSGAGAAEHFSEVFAKTNASAALAAGIFHRKEVPIPLVKEHLLKEGIEVRI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02727 596 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 68 266 IPR010139 GO:0000105|GO:0016763
Bva12g02727 596 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 79 596 - -
Bva12g02727 596 Gene3D Aldolase class I 288 596 IPR013785 -
Bva12g02727 596 CDD HisF 286 590 IPR004651 GO:0000105|GO:0000107
Bva12g02727 596 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 67 268 IPR010139 GO:0000105|GO:0016763
Bva12g02727 596 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 79 596 - -
Bva12g02727 596 Pfam Histidine biosynthesis protein 287 578 IPR006062 GO:0000105
Bva12g02727 596 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 67 275 - -
Bva12g02727 596 PIRSF IGPS_HisHF 65 596 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Bva12g02727 596 SUPERFAMILY Ribulose-phoshate binding barrel 283 595 IPR011060 -
Bva12g02727 596 ProSiteProfiles CobBQ-type GATase domain profile. 65 258 - -
Bva12g02727 596 CDD GATase1_IGP_Synthase 68 266 IPR010139 GO:0000105|GO:0016763
Bva12g02727 596 Pfam Glutamine amidotransferase class-I 70 265 IPR017926 -
Bva12g02727 596 SUPERFAMILY Class I glutamine amidotransferase-like 67 267 IPR029062 -
Bva12g02727 596 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 284 595 IPR004651 GO:0000105|GO:0000107
Bva12g02727 596 Gene3D - 64 287 IPR029062 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02727 Bva-Chr12 19897156 19903621 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02727 K01663 - gmx:100500353 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02727 12 19897156 19903621 Bva12g02727 12 19897156 19903621 ECH