Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00245 ATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTCGGCTTATAGGTCAGTCGGTTCAGAAAATTCGGTCTGGCCTCTCTGTTTCTGCTAGAGTTTCCTCCACTGTCGAGAAAGAGATTGTGTTTAGTTCAGACAGATGTGGGTTTGTAAGGAACTTCTGTAATATAACATCCGGATCTGGGATTAATTCTAAGGCTATGAGGGTGGTTTTTCATCCAGAGGCAGTAGCTTTTCGAACCTGGGGGCGTCCATTTTCTTCAGACAATGGAGATACAGTGGATGTTGTGGTCCCTCCTCTGGCTGAATCTATTGCTGATGGAACTCTGGCAAACTTTTTGAAGAGGCCTGGGGACAGGGTTAAAGCTGATGAGCCAATTGCTCAAATTGAAACAGATAAGGTGACAATCGATGTTTCAAGTCCTGAGTCAGGTGTCATTCTGAAGTTTCTAGCCAATGAAGGGGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGACGCAACTCATGTTGCTCCATCTGAGAGTACATCTGAGAAAGCTGCTCCTCAGCCAACGCAAAAGGTTAGTGAGGAGAAGAAAGCCCCCAAAGTTGAAACCCAACCTGCTAAAGAGAAGCCCAAAGCACCTCCTTCCACATTGAGTTCTCCCACTGAGCCCCAACTTCCTCCCAAAGAAAGAGAAAGGCGGGTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCCCAGAACACATTTGCTATGCTCACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTTCTGATTATAAGGACGCTTTTGTTGAAAAACACGGAGTCAAGTTGGGGCTTATGTCAGGCTTTGTCAAAGCTGCTGTCAACGCACTCCAACATCAACCTATTGTAAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTATATAGATATCAGCATAGCCGTTGGTACTCCAAAGGGCCTTGTTGTTCCTGTTATCCGCAATGCTGAAACCATGAACTTTGCTGATATAGAAAAGCAAATCAATGCTTTTGCTAAGAAGGCAAATGATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCTAACGGTGGTGTTTACGGAAGCCTTTTGAGTACCCCTATTATCAACCCCCCTCAGTCGGCAATTTTGGGTATGCATTCCATAGTGAGCCGTCCAACGGTTGTTGGAGGAAACGTTGTCCCAAGACCATTGATGTACGTTGCTCTAACATATGACCATAGAATTATCGACGGAAGAGAGGCAGTGTTCTTTCTGCGCCGCATCAAAGATATCGTGGAGGATCCTCGCAGGCTTTTGCTTGACATTTAA 1398 0.4499 MFGVVRRRVASGSPSPRLIGQSVQKIRSGLSVSARVSSTVEKEIVFSSDRCGFVRNFCNITSGSGINSKAMRVVFHPEAVAFRTWGRPFSSDNGDTVDVVVPPLAESIADGTLANFLKRPGDRVKADEPIAQIETDKVTIDVSSPESGVILKFLANEGDTVEPGNKIAIISRSADATHVAPSESTSEKAAPQPTQKVSEEKKAPKVETQPAKEKPKAPPSTLSSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNAETMNFADIEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPTVVGGNVVPRPLMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00245 465 CDD lipoyl_domain 97 170 - -
Phco3g00245 465 Pfam Biotin-requiring enzyme 98 170 IPR000089 -
Phco3g00245 465 MobiDBLite consensus disorder prediction 230 244 - -
Phco3g00245 465 Gene3D - 95 173 - -
Phco3g00245 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 121 150 IPR003016 -
Phco3g00245 465 MobiDBLite consensus disorder prediction 177 193 - -
Phco3g00245 465 NCBIfam dihydrolipoyllysine-residue succinyltransferase 196 464 IPR006255 GO:0004149|GO:0006099|GO:0045252
Phco3g00245 465 SUPERFAMILY Single hybrid motif 96 187 IPR011053 -
Phco3g00245 465 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 228 463 - -
Phco3g00245 465 SUPERFAMILY CoA-dependent acyltransferases 235 464 - -
Phco3g00245 465 Gene3D - 221 461 IPR023213 -
Phco3g00245 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 235 463 IPR001078 GO:0016746
Phco3g00245 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 96 171 IPR000089 -
Phco3g00245 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 50 464 - -
Phco3g00245 465 MobiDBLite consensus disorder prediction 177 244 - -
Phco3g00245 465 MobiDBLite consensus disorder prediction 194 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00245 Phco-Chr3 1769845 1775568 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00245 3 1769845 1775568 Phco3g00245 3 1769845 1775568 ECH