Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03312 ATGTTTGGTGTTGTAAGACGAAGGGTTGCTTCTGGCGGCACATCTTCGTTGCTGAAATTAAGGTCTGGCCCTGCTAGGGTTTCTTCCATTTTGGAAAAAGAGATTGCATTAAGCTCAGGAGGTTGCGGGAATGTTCGGAATTTCAGTCACATAACACCTGGAAGCTGGATTAATTCCAAACCTATAAGGGATGTCTTTCATCAGGAGGTCTCCATTCAAACATGGAGGCGTTCATTTTCTTCGGATAATGGAGATACTGTTGATGTCGTGGTGCCTCCATTGGCTGAATCCATCGAAGATGGGACTCTTGCAAAATTTCTGAAGAGGCCTGGTGACAGGGTTGCTGTTGATGAACCAATTGCTCAAATCGAAACAGATAAGGTGACAATTGACGTTTCAAGTCCTGAGTCAGGTGTTATTCTGAAGCTTCTAGCCAATGAAGGTGATACTGTTGAGCCAGGTCACAAGATAGCAATCATATCAAGATCTGCTGATGCTACTCACGTTGCGCCATCTGAGTCAGCACCTGAAAAACCTGCTCCCAAGCCAACTCCAAAAGCTAGTGAACCCGAGGAGAAGAAAGCTCCTAAAGTTGAAACTACTCCGAAAGAGAAGCCTAAAGCACCTGCTCCTCAAAACTCTCCATCTGAGCCACAACTTCCTCCTAAGGAAAGAGAAAGACGAGTTCCTATGACAAGGATTCGGAAACGGGTTGCCACACGATTGAAAGATTCCCAAAACACATATGCTATGTTGACAACCTTCAATGAAGTTGATATGTCTAATTTAATGAAACTCCGTGCTGATTACAAGGATGCTTTTCTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCTGGATTTATCAAAGCTGCTGTCAATGCACTTCAACATCAACCGATTATAAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTATATTGATATCAGCATAGCTGTTGGAACCCCAAAGGGACTTGTTGTGCCAGTTATCCGGAATGCTGATACAATGAACTTTGCGGATATAGAAAAACAGATCAACACTTTTGCAAAGAAAGCCAATGCTGGAACTTTATCTATTGATGAGATGGCTGGAGGTACTCTAACAATATCAAATGGTGGTGTTTATGGCAGCCTTTTAAGTACCCCTATTATCAACCCTCCTCAGTCGGCAATCTTGGGTATGCATTCGATCGTGAGCCGTCCAGCTGTTGTTGGAGGAGTGGTTGTTCCAAGGCCACTGATGTACATTGCTCTAACATATGACCATAGAATCATTGATGGAAGAGAGGCAGTGTTCTTTCTGCGACGCATCAAAGATACTGTGGAGGACCCTCGCAGGCTTTTGCTTGAGATATGA 1368 0.4335 MFGVVRRRVASGGTSSLLKLRSGPARVSSILEKEIALSSGGCGNVRNFSHITPGSWINSKPIRDVFHQEVSIQTWRRSFSSDNGDTVDVVVPPLAESIEDGTLAKFLKRPGDRVAVDEPIAQIETDKVTIDVSSPESGVILKLLANEGDTVEPGHKIAIISRSADATHVAPSESAPEKPAPKPTPKASEPEEKKAPKVETTPKEKPKAPAPQNSPSEPQLPPKERERRVPMTRIRKRVATRLKDSQNTYAMLTTFNEVDMSNLMKLRADYKDAFLEKHGVKLGLMSGFIKAAVNALQHQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINTFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPAVVGGVVVPRPLMYIALTYDHRIIDGREAVFFLRRIKDTVEDPRRLLLEI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03312 455 MobiDBLite consensus disorder prediction 184 204 - -
Vifa1g03312 455 Gene3D - 210 451 IPR023213 -
Vifa1g03312 455 SUPERFAMILY Single hybrid motif 86 179 IPR011053 -
Vifa1g03312 455 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 55 454 - -
Vifa1g03312 455 NCBIfam dihydrolipoyllysine-residue succinyltransferase 196 454 IPR006255 GO:0004149|GO:0006099|GO:0045252
Vifa1g03312 455 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 111 140 IPR003016 -
Vifa1g03312 455 MobiDBLite consensus disorder prediction 164 234 - -
Vifa1g03312 455 ProSiteProfiles Biotinyl/lipoyl domain profile. 86 161 IPR000089 -
Vifa1g03312 455 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 218 453 - -
Vifa1g03312 455 Pfam Biotin-requiring enzyme 88 160 IPR000089 -
Vifa1g03312 455 Gene3D - 85 163 - -
Vifa1g03312 455 CDD lipoyl_domain 87 160 - -
Vifa1g03312 455 MobiDBLite consensus disorder prediction 220 234 - -
Vifa1g03312 455 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 225 453 IPR001078 GO:0016746
Vifa1g03312 455 SUPERFAMILY CoA-dependent acyltransferases 225 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03312 Vifa-Chr1 515783467 515788791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03312 37 453 Acyl Lipid Metabolism Gene Families AT3G13930 29.630 3.18e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03312 K00658 - gmx:100799149 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03312 1 515783467 515788791 Vifa1g03312 1 515783467 515788791 ECH