Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2468 ATGCTCTACTCTCTCTTCTTCACTCTGCGGCGCCATCGCCACCTTCTTCTCTCTTCTCTCTCTTTCATCCCCTCTACCCAAAACCACAACGTTAACCACTTTCGCGCCATTTCTCAACTCGCACCGTTACCCAACCCTTCCCTTCTCGACACCAATGCTTCTCTCAAACCCCACCTCTTGGAACTCTCCCTCGCCGTCCCCGAAACCACTCGCACGTGCTGGAGGCTCTCCGCGCTGGGCCCCTCGCACGTGCTTCAGCTCCTGCTGGCTCTCCAGTCCCAGCGCGTCACGCTCGAAAATGTTCGATCTTTGTGGGAAATTTTCAAATGGGGTGCTAGCGAAAACGCGGCTTTCAACTTCAACCACCCTTCACAGTCCCACGAAATCATGGCCTCGCTGCTCGTGCAAGTGGGGTTGTTTAAAGAAGCGGAAAACTTGCTCTTCGCATTGGAAAGTAATGGGATTTTTTATGATCTGACTAAAGGGTACGTTGGTGCGAGAGATTGGGAAAAGGGTGTTTTTGTGTATGATGCTATGAAGGGTAGAGGGAAGGTTCCTTCGAGGGATTGTTATGGTGTTTTGATTGATCTCTTGGTGAAGATGAAGAGGACGGGTCTTGCATATAGGGTGGCTTTTGATTTGGTGGATTTGGGAGTACCATTGAGTGGTGATGAAGTGAAGGCTTTGGAGAAGGTTATGGTGCTGCTTTGCATTGATGGGAGGATTCAGGAAGCAAGGAACTTGGTGAAGAAGGTGTTGGTTCTTGATTCTGAGGTTAGTAGTTTGGTTTTTGATGAAATTGCGTTTGGATATTGTGAAAAGAGGGACTTCAAAGATTTGGTTAGTTTCTTTGTTGAGGTGAAGTGTGCCCCTAGTGTGAAGGCTGCTAATAGAGTTGTGAATTCGTTGTGTAGGAGTTATGGTGTAGAAAGAGCAGGGTTGTTTCTGCAAGAGCTAGAGAGTTTAGGCTTTAGTCCTGATGAAGTAACCTATGGAATATTGATTGGTTGGAGTTGTCACGAAGAGAAGATGAAAAATGCGTTTAGTTGTTTGTCAGTTATGCTATCGAAAAGCCTTGTGCCACGGCTGTATACTTATAATGCTCTTATAAGTGGGTTGTTTAAGGTTGGTATGTTGGATCATGCACGGGACATTGTTGATGAGATGATTGAGAGGGGGACACTGCCTGATATTTCGACTTTCAGAGTTCTTATAGCGGGGTATTGTAAGTCTAGGCAGTTTGATAAAGTGAAAAGTTTAATTCATGAGATGGAGAGCCATGGATTGATTAAACTTGCTTTGTTGGAGAATCCAATTTCAAAGGCTTTTCTGATTTTGGGCTTGGATCCTTTGAGTGTGAAGTTGAAACGGGACAATGATGGGGGACTTTCGAAAACAGAGTTCTTTGATGATGTTGGAAATGGACTTTATTTGGATGCAGATGTTGATCAGTATGAGAAACACATTAATTTGGATCTTGAAGAATCCATGGTACCTAACTTCAATTCATTTGTAAGGAAGGAATGTAGCAATTGTAACCACAAAAATGCATTGATTTTGGTTGAAGAAATGCTTTGTTGGGGACAAGAATTGCTGCTGCCTGAATTCTCAAAGTTAGTGAGACTACTTTGTTCATCTCGGTCTCTAATCAAGTCAGTGACCTCACTTTTGGAGAAAATGCCAAAGTCTGCCAATAAACTTGACCCTGAAACTCTCAATTTAGTTGTACAGGCATACAGCAAGAAAGGCTTACTGTCCAAAGCAAAAAGTATACTGGATGAAATGCTTCAAAACAAATTTCATGTCAAGAATGAGACATATACAGCCATATTAATGCCTTTATGTAAGAAGGGAAATATGAAAGACTTCAATTATTACTGGGATGTTGCTTGTAGAAATACATGGTTACCAGGTTTGGAGGACTTTAAACATCTTCTTGTTCATATCTGCCATCGGAAAATGCTTAAGGAAGCATCACAGTTTCTTGAAATCATGCTTTTATCATACCCTTACCTAAAGTCAGATATATGTCATGTATTTCTAGAAGTACTTTCTAGTAGGGGTCTTACAAACACTGCACTTGTAGTTATAAAACAACTGCAACCTTGTTTCATATTTGACCATGCTGGTTATAATAATCTTATAAGGGGCTTATGTAATGAAGGAAAATCTTCTCTGGCCTTTACAGTATTGGATGATATGCTAGATAGAGATTTGGCACCTTGTTTGGATGTTTCAGTTTTGTTAATCCCTCAGTTGTGCAAGGCTCATAGATTTGACAAAGCTATCTCATTAAAATATATCATTTTGAAAGAGCAGCCTTCATTTTCTCATGCTGCAGATTGTGCATTGATTTGTGGATTTTGTAATATGGGGAGCATAGAGAAAGCAAACACTCTGTTCTGTGATATATTGTCTAAAGGGTCAAGTCCAGACAATGTACTGTGTAACATACTTATTCAGGGCAATTGCCAAGCTAATGACTTGAGAAAAGTAGGGGAGCTACTTGGTGTTGTAATAAGAATGGGTTGGGAGCTATCCCTCACAAGTTACAGGAATTTAGTGCAATCAGTTTGTAGGAAAGGTAGAGTCCAGTTTGCGCTGAGCTTAAAGAACCTTATGCTTGCACAATGTCCACTTGATGGGCTTATCATATATAACATTCTTATGTTCTATCTTTTGTCAGCTGGAAACAGTTTGGATGTTAATAAGATACTAACTGAAATGGAAGAGAAGAAAGTTGTACTTGATGAAGTTGGTCATAATTTTCTTGTTCATGGTTTCTTGCAATGTAAAGATTTATCTAGTTCTCTACATTATCTAACTACCATGATTTCAAAGGGACTCAAACCAAGTAACCGCAGCTTGAGGAAGGTAATAAGCAGCCTGTGTGAATCTGGGGATCTGCAAAAAGCCCTGGAATTGAGTCAAGAAATGAGATTAAGAGGCTGGATACATGATTCTGCCATTCAAACGTCTATTGTTGAAAGCCTTCTTCTGTGTGGTAAGATACAAGAAGCAGAAACCTTTATGGATAGGATGGGGGATGAATCTCTAACTCCTGATAATATCAACTATGATTACCTTATTAAGTGTTTTTGCCAGCATGGAAGACTTGACAAGGCAGTTCATCTTATGAACACAATGCTGAAGAAACATAACATTCCAATTTCCACCAGTTATGATTTCCTCATTCATGGATTCTGTGCACAAAATAAATTGGACATAGCTTTGAATTTTTATTCTGAGATGTTGAATTGGAATCTCAAACCAAGAATTGACACAGTGGAAATGCTTGTCCATAGATTCTGCCAAGATGGGAAGACAGAACTAGCAGAACAATTCCTAGTGAACATGAGTCATGGAGATGAAACTCCAACCAGAAAAATGTATTGCACTGTAATTAAGAGTTATCACATGGAAAAGAATCTTAGGAAGGCATCAGAGCTCATGCAAGCCATGCAGGAAAGAGGCTATCAGCCTGACTTTGAAACACATTGGTCTCTCATAAGCAACTTAAACAGTGCCAAAGCTAAGGACACGGATAATGGGAGCAAGGGATTTTTATCAAGACTTCTTTCTAGAAGCGGACCAGCAACAACAATGGAGGCGCCGCCATTTGCTTCTTCACCTTCCTCTTCCTCTCTCTTTTCTATTCGCAACAAGCCACTCTCATCCCCAAGAATCACCCATTTCGGCAATATCAAACAATCGAGAAGCTTCGCAGTTCGCGCCTCCTCTTCTGGGGACTCTGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGAAGTGTCAGGAATGCAATCAGATCCCTCGGGTTTGACATCAAAGATGTGCAATCTCCGCAAGATATTTTGAATGCAAGTCAGTTAGTTTTTCCAGGAGTTGGAGCATTTGCTGCTGCCATGGAGGTGTTAAGCAAAACTGGAATGGATGAAGCACTATGTTCATATATTGAAAAGGATCGTCCATTTTTGGGCATTTGTCTTGGACTTCAACTACTTTTTGAATCTAGTGAGGAGAACGGACCAGTAAAAGGTCTTGGCGTAATACCTGGAACTGTTGGGCGATTTGACTCATCAAATGGTTTTAGAGTACCACATATTGGCTGGAATGCTTTACAAATCACGAAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTTCAGATGACAACAGTGAGTGGATATCCTCCACCTGTGACTATGGTGACAAATTTATAGCATCTATTAGAAGAGGAAATGTGCATGCAGTTCAATTCCATCCAGAGAAGAGTGGAGGCAAACAGAAGCCTGGGGAAGGCAAAGCTTCAAAACTTGCAAAAAGGGTGATTGCTTGTCTTGATGTGAGAGCAAATGATAAGGGGGACCTTGTTGTAACCAAAGGCGACCAGTATGATGTAAGAGAACATACAAAAGAGAATGAGGTAAGAAATCTTGGCAAGCCAGTTGATCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACTGGATTTCGCGACTTCCCTCTTGGTGATTTACCTATGCTGCAGGTATTGCGATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGGGGAGGAATTAGAGATTTCACAGATTCAACTGGAAGGTCTGGGGCTGATAAGATTTCCATCGGAAGTGATGCAGTTTATGCTGCAGAAGAATATTTAAGAACCGGAGTAAAGACTGGGAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGTAGAGTGTATGTAAAGGATCCCAATGATGTGCAATTAAAGACCATAAGGGTTTCAAGTCCAGGTCCAAAAGGAGAAGAACATGCATGGTATCAATGTACAGTTAATGGGGGACGAGAAGGCCGGCCAATTGGTGCTTATGAACTAGCAAAAGCAGTTGAAGAGCTTGGTGCTGGAGAAATACTACTTAATTGCATTGATTGCGATGGTCAAGGGAAAGGTTTTGATGTAGATTTAATTAAGTTGATATCAGATGCTGTTAGTATCCCTGTGATTGCAAGTAGCGGTGCCGGTGCTCCTGAACACTTCTCTGAGGTGTTCAATAAAACAAATGCATCAGCAGCACTTGCTGCTGGCATTTTTCACAGGAAGGAGGTGCCTGTTCAGTCGGTAAAAGAGCATTTGTTGAAGGAAGGCATAGAAGTCCGAATCTGA 5259 0.414 MLYSLFFTLRRHRHLLLSSLSFIPSTQNHNVNHFRAISQLAPLPNPSLLDTNASLKPHLLELSLAVPETTRTCWRLSALGPSHVLQLLLALQSQRVTLENVRSLWEIFKWGASENAAFNFNHPSQSHEIMASLLVQVGLFKEAENLLFALESNGIFYDLTKGYVGARDWEKGVFVYDAMKGRGKVPSRDCYGVLIDLLVKMKRTGLAYRVAFDLVDLGVPLSGDEVKALEKVMVLLCIDGRIQEARNLVKKVLVLDSEVSSLVFDEIAFGYCEKRDFKDLVSFFVEVKCAPSVKAANRVVNSLCRSYGVERAGLFLQELESLGFSPDEVTYGILIGWSCHEEKMKNAFSCLSVMLSKSLVPRLYTYNALISGLFKVGMLDHARDIVDEMIERGTLPDISTFRVLIAGYCKSRQFDKVKSLIHEMESHGLIKLALLENPISKAFLILGLDPLSVKLKRDNDGGLSKTEFFDDVGNGLYLDADVDQYEKHINLDLEESMVPNFNSFVRKECSNCNHKNALILVEEMLCWGQELLLPEFSKLVRLLCSSRSLIKSVTSLLEKMPKSANKLDPETLNLVVQAYSKKGLLSKAKSILDEMLQNKFHVKNETYTAILMPLCKKGNMKDFNYYWDVACRNTWLPGLEDFKHLLVHICHRKMLKEASQFLEIMLLSYPYLKSDICHVFLEVLSSRGLTNTALVVIKQLQPCFIFDHAGYNNLIRGLCNEGKSSLAFTVLDDMLDRDLAPCLDVSVLLIPQLCKAHRFDKAISLKYIILKEQPSFSHAADCALICGFCNMGSIEKANTLFCDILSKGSSPDNVLCNILIQGNCQANDLRKVGELLGVVIRMGWELSLTSYRNLVQSVCRKGRVQFALSLKNLMLAQCPLDGLIIYNILMFYLLSAGNSLDVNKILTEMEEKKVVLDEVGHNFLVHGFLQCKDLSSSLHYLTTMISKGLKPSNRSLRKVISSLCESGDLQKALELSQEMRLRGWIHDSAIQTSIVESLLLCGKIQEAETFMDRMGDESLTPDNINYDYLIKCFCQHGRLDKAVHLMNTMLKKHNIPISTSYDFLIHGFCAQNKLDIALNFYSEMLNWNLKPRIDTVEMLVHRFCQDGKTELAEQFLVNMSHGDETPTRKMYCTVIKSYHMEKNLRKASELMQAMQERGYQPDFETHWSLISNLNSAKAKDTDNGSKGFLSRLLSRSGPATTMEAPPFASSPSSSSLFSIRNKPLSSPRITHFGNIKQSRSFAVRASSSGDSVVTLLDYGAGNVRSVRNAIRSLGFDIKDVQSPQDILNASQLVFPGVGAFAAAMEVLSKTGMDEALCSYIEKDRPFLGICLGLQLLFESSEENGPVKGLGVIPGTVGRFDSSNGFRVPHIGWNALQITKDSGILDDVGNHHVYFVHSYRAMPSDDNSEWISSTCDYGDKFIASIRRGNVHAVQFHPEKSGGKQKPGEGKASKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSTGRSGADKISIGSDAVYAAEEYLRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVKDPNDVQLKTIRVSSPGPKGEEHAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVSIPVIASSGAGAPEHFSEVFNKTNASAALAAGIFHRKEVPVQSVKEHLLKEGIEVRI 1752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2468 1752 Pfam Histidine biosynthesis protein 1456 1734 IPR006062 GO:0000105
Aed4g2468 1752 Pfam PPR repeat 959 983 IPR002885 -
Aed4g2468 1752 Pfam PPR repeat 1130 1158 IPR002885 -
Aed4g2468 1752 Pfam PPR repeat 711 738 IPR002885 -
Aed4g2468 1752 Pfam PPR repeat 1060 1087 IPR002885 -
Aed4g2468 1752 Pfam PPR repeat 571 599 IPR002885 -
Aed4g2468 1752 Pfam PPR repeat 783 808 IPR002885 -
Aed4g2468 1752 Gene3D Tetratricopeptide repeat domain 854 970 IPR011990 GO:0005515
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Aed4g2468 1752 CDD HisF 1455 1746 IPR004651 GO:0000105|GO:0000107
Aed4g2468 1752 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1453 1751 IPR004651 GO:0000105|GO:0000107
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1022 1056 IPR002885 -
Aed4g2468 1752 CDD GATase1_IGP_Synthase 1253 1440 IPR010139 GO:0000105|GO:0016763
Aed4g2468 1752 Pfam Glutamine amidotransferase class-I 1255 1445 IPR017926 -
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1127 1161 IPR002885 -
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Aed4g2468 1752 TIGRFAM PPR: pentatricopeptide repeat domain 571 600 IPR002885 -
Aed4g2468 1752 TIGRFAM PPR: pentatricopeptide repeat domain 959 985 IPR002885 -
Aed4g2468 1752 TIGRFAM PPR: pentatricopeptide repeat domain 1026 1052 IPR002885 -
Aed4g2468 1752 TIGRFAM PPR: pentatricopeptide repeat domain 711 741 IPR002885 -
Aed4g2468 1752 TIGRFAM PPR: pentatricopeptide repeat domain 400 429 IPR002885 -
Aed4g2468 1752 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Aed4g2468 1752 TIGRFAM PPR: pentatricopeptide repeat domain 1130 1162 IPR002885 -
Aed4g2468 1752 TIGRFAM PPR: pentatricopeptide repeat domain 783 812 IPR002885 -
Aed4g2468 1752 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1252 1453 IPR010139 GO:0000105|GO:0016763
Aed4g2468 1752 Pfam PPR repeat family 364 410 IPR002885 -
Aed4g2468 1752 SUPERFAMILY Ribulose-phoshate binding barrel 1452 1751 IPR011060 -
Aed4g2468 1752 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 1252 1467 - -
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 917 951 IPR002885 -
Aed4g2468 1752 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 1253 1440 IPR010139 GO:0000105|GO:0016763
Aed4g2468 1752 Gene3D - 1251 1445 IPR029062 -
Aed4g2468 1752 Gene3D Aldolase class I 1455 1752 IPR013785 -
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1057 1091 IPR002885 -
Aed4g2468 1752 Pfam PPR repeat 1019 1049 IPR002885 -
Aed4g2468 1752 Gene3D Tetratricopeptide repeat domain 778 839 IPR011990 GO:0005515
Aed4g2468 1752 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 64 1197 - -
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 952 986 IPR002885 -
Aed4g2468 1752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
Aed4g2468 1752 SUPERFAMILY Class I glutamine amidotransferase-like 1252 1440 IPR029062 -
Aed4g2468 1752 Gene3D Tetratricopeptide repeat domain 79 268 IPR011990 GO:0005515
Aed4g2468 1752 Gene3D Tetratricopeptide repeat domain 1122 1202 IPR011990 GO:0005515
Aed4g2468 1752 Gene3D Tetratricopeptide repeat domain 990 1121 IPR011990 GO:0005515
Aed4g2468 1752 Gene3D Tetratricopeptide repeat domain 480 638 IPR011990 GO:0005515
Aed4g2468 1752 Gene3D Tetratricopeptide repeat domain 270 437 IPR011990 GO:0005515
Aed4g2468 1752 Gene3D Tetratricopeptide repeat domain 639 777 IPR011990 GO:0005515
Aed4g2468 1752 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 64 1197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2468 Aed-Chr4 26799240 26811588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2468 212 762 Glycosyltransferase AT1G05670 22.913 8.75e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2468 - - gmx:100781687 2040.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2468 4 26799240 26811588 Aed4g2468 4 26799240 26811588 ECH