Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00429 ATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGCTTCTAGGTCAGTCAGTTCAGAAAATTCGGTCTGGCCTTTCTGTTTCTGCTAGAGTTTCTTCCACTGTTGAGAAAGAGATTGCAATTCATTCAGGCGGATGTGGATTTGTAAGGAACTTTTGTAATATAACACCTGGATGCGGGACTAATTCTAAAGTTATGAGTGTGGTTTTTCATCCAAGGTCAGCAGCTGTTCGAACCTGGGGGCGTCCATTTTCTTCAGACAGTGGAGATACGGTTGATGTTGTGGTCCCTCCTCTAGCTGAATCTATCTCTGATGGAACTCTGGCAAATTTTTTGAAGAGGCCTGGTGACAGGGTTAATGCTGATGAGCCAATTGCTCAAATTGAAACAGATAAGGTGACAATTGATGTTTCAAGTCCGGAGTCAGGTGTTATTCTGAAGTTTCTAGCCAATGAAGGAGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGACGCAACTCATGTTGCTCCATCTGAGACTACACCGGAGAAAGCAGCTCCTCAGCCAACTCAAAAGGTTAGCGAGGAGAAGAAAGCTCCCAAAGTTGAAACTCAACCTGCTAAAGAGAAGCCCAAACCACCCCCTGCCACATTGAGTTCTCCCACTGAGCCCCAACTTCCTCCTAAAGAAAGAGAAAGACGGGTTCCTATGACAAGGCTTCGGAAACGGGTTGCTACACGGCTGAAAGATTCCCAGAACACTTTTGCTATGCTCACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTTCTGATTATAAGGATGCTTTTGTTGAGAAGCACGGAGTCAAGTTGGGGCTTATGTCGGGCTTTGTCAAAGCTGCAGTGAATGCACTCCAACATCAACCAATTGTCAATGCTGTCATTGATGGGGATGATATTATATACAGAGATTATATAGATATCAGCATAGCTGTTGGTACCCCGAAGGGCCTTGTTGTTCCTGTTATCCGCAATGCGGATACCATGAACTTTGCCGATATAGAAAAGCAAATCAATGCTTTTGCTAAGAAGGCAAATGATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCCAATGGTGGTGTTTATGGAAGCCTTTTGAGTACCCCTATCATCAACCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGCCGTCCTACGGTTGTTGGAGGAAATATTGTCCCAAGACCATTGATGTACGTTGCTCTAACTTATGACCATAGAATTATTGATGGAAGAGAGGCAGTGTTCTTTCTGCGGCGCATCAAAGATATCGTGGAGGATCCTCGCAGGCTTTTGCTTGACATATAA 1398 0.4464 MFGVVRRRVASGSPSPWLLGQSVQKIRSGLSVSARVSSTVEKEIAIHSGGCGFVRNFCNITPGCGTNSKVMSVVFHPRSAAVRTWGRPFSSDSGDTVDVVVPPLAESISDGTLANFLKRPGDRVNADEPIAQIETDKVTIDVSSPESGVILKFLANEGDTVEPGNKIAIISRSADATHVAPSETTPEKAAPQPTQKVSEEKKAPKVETQPAKEKPKPPPATLSSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPTVVGGNIVPRPLMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00429 465 CDD lipoyl_domain 97 170 - -
Vimu1g00429 465 MobiDBLite consensus disorder prediction 230 244 - -
Vimu1g00429 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 96 171 IPR000089 -
Vimu1g00429 465 SUPERFAMILY CoA-dependent acyltransferases 235 464 - -
Vimu1g00429 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 121 150 IPR003016 -
Vimu1g00429 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 56 464 - -
Vimu1g00429 465 NCBIfam dihydrolipoyllysine-residue succinyltransferase 195 464 IPR006255 GO:0004149|GO:0006099|GO:0045252
Vimu1g00429 465 Gene3D - 95 173 - -
Vimu1g00429 465 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 228 463 - -
Vimu1g00429 465 Gene3D - 221 461 IPR023213 -
Vimu1g00429 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 235 463 IPR001078 GO:0016746
Vimu1g00429 465 Pfam Biotin-requiring enzyme 98 170 IPR000089 -
Vimu1g00429 465 MobiDBLite consensus disorder prediction 174 244 - -
Vimu1g00429 465 SUPERFAMILY Single hybrid motif 96 188 IPR011053 -
Vimu1g00429 465 MobiDBLite consensus disorder prediction 194 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00429 Vimu-Chr1 2598844 2604746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00429 64 463 Acyl Lipid Metabolism Gene Families AT1G54220 28.423 6.16e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00429 K00658 - gmx:100799149 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00429 1 2598844 2604746 Vimu1g00429 1 2598844 2604746 ECH