Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2022 ATGTTTGGTGTCATAAGGCGAAGAGTTGCTTCTGGCAGCTCGTCTCTTTTGTTTCAAGGTCCCTCAGGGCAGAAAATTCGGCCTAGCCCAGGACTTCCAAGTAGAGTTTCTTCCATTGTGGAAAAACAGATTGTGTATCATCCAGGAGGATGTAAAAATGTTCGGAACTTCTGTCACATAAGTTCAACTGGATGCTGGATTCATTTGCAGCCTTCGAGAGAGTTTTTTCCGAGTAACTGTCAAGCGGTTACCATGAAAACATGGAGGCGCTCCTTTTCTTCAGATAATGGAGATCTGGTTGATGTTGTGGTCCCTCCGTTAGCTGAATCTATTGCTGATGGCACTCTGGCAAAATTTTTGAAGAATCCAGGCGATAGTGTTAAAGTTGATGAACCAATTGCTCAGATTGAAACAGATAAGGTGACAATTGATGTTACCAGTCCTGAGTCAGGTGTGATTCAGAAGCTCTTAGCCAAGGAAGGAGATACTGTTGAACCTGGTAACAAGATAGCAATCGTTTCAAGGTCTGCTGAAGCCACAACTCATGTTGCCCCATCTGAGGGTACATCTGAGAAACCTCCTCCTGAGCCAACCAAAAAGACTAGTGAGGAGAAGAAAGCACCAAAAGTTGAAACTGCCCCTATTACAGAGAAGCCCAAAGCACCCTCTCCTCCACAGCGCTCTCCCACTGAGCCACAGCTTCCCCCTAAGGAAAGAGAAAGAAGAGTTCCGATGACAAGACTTCGGAAACGAGTTGCTACAAGGTTGAAAGATTCCCAAAACACGTTCGCATTGCTGACAACATTCAATGAAGTTGACATGACTAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCCGGGTTTGTCAAAGCTGCTGTGAATGCACTCCAGAATCAGCCCATTGTAAATGCAGTCATTGATGGGGATGATATAATATACAGAGACTATATAGATATCAGCGTAGCTGTTGGCACTTCAAAGGGCCTTGTTGTGCCAGTTATCCGTGATGCTGATAAAATGAACTTCGCGGATATAGAAAAGGAGATCAATAATTTTGCAAAGAAGGCAAATAATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCAAATGGTGGTGTTTATGGGAGCCTTTTGAGTACCCCTATTATCAACCCCCCTCAGTCAGCGATCTTGGGTATGCACTCCATAGTGAACCGTCCAATGGTTGTTGGAGGTGAAATTGTCCCAAGGCCAATGATGTATGTTGCTCTAACATATGACCATAGATTAATTGATGGAAGAGAGGCAGTGTTCTTTTTGCGTCGTATCAAAGATATTATCGAGGATCCTCGCAGGCTTCTGCTAGACATTTGA 1410 0.4362 MFGVIRRRVASGSSSLLFQGPSGQKIRPSPGLPSRVSSIVEKQIVYHPGGCKNVRNFCHISSTGCWIHLQPSREFFPSNCQAVTMKTWRRSFSSDNGDLVDVVVPPLAESIADGTLAKFLKNPGDSVKVDEPIAQIETDKVTIDVTSPESGVIQKLLAKEGDTVEPGNKIAIVSRSAEATTHVAPSEGTSEKPPPEPTKKTSEEKKAPKVETAPITEKPKAPSPPQRSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFVKAAVNALQNQPIVNAVIDGDDIIYRDYIDISVAVGTSKGLVVPVIRDADKMNFADIEKEINNFAKKANNGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGEIVPRPMMYVALTYDHRLIDGREAVFFLRRIKDIIEDPRRLLLDI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2022 469 Gene3D - 226 465 IPR023213 -
Glsi10g2022 469 MobiDBLite consensus disorder prediction 173 248 - -
Glsi10g2022 469 MobiDBLite consensus disorder prediction 218 232 - -
Glsi10g2022 469 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 239 467 IPR001078 GO:0016746
Glsi10g2022 469 Pfam Biotin-requiring enzyme 101 172 IPR000089 -
Glsi10g2022 469 SUPERFAMILY CoA-dependent acyltransferases 239 468 - -
Glsi10g2022 469 CDD lipoyl_domain 100 173 - -
Glsi10g2022 469 SUPERFAMILY Single hybrid motif 99 190 IPR011053 -
Glsi10g2022 469 Gene3D - 99 175 - -
Glsi10g2022 469 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 83 468 - -
Glsi10g2022 469 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 124 153 IPR003016 -
Glsi10g2022 469 MobiDBLite consensus disorder prediction 193 213 - -
Glsi10g2022 469 MobiDBLite consensus disorder prediction 233 248 - -
Glsi10g2022 469 ProSiteProfiles Biotinyl/lipoyl domain profile. 99 174 IPR000089 -
Glsi10g2022 469 NCBIfam dihydrolipoyllysine-residue succinyltransferase 203 468 IPR006255 GO:0004149|GO:0006099|GO:0045252
Glsi10g2022 469 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 232 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2022 Glsi-ChrGlsi10 14407256 14414050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2022 73 467 Acyl Lipid Metabolism Gene Families AT3G13930 28.976 1.40e-38 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2022 10 14407256 14414050 Glsi10g2022 10 14407256 14414050 ECH