Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0072 ATGTTTTCTATCATTAGGCGAAGGGTTGCCTCTAGCAGCCCATCTCCTTTGCTCCTGGGTCAGTCGGTGCAGAAATTCCGGTCTGGCTCGTTAGTTCCTTCAAGAGTTTCTTCTATTCTGGAAACAGAGATTGCATTTCATTCAGGAGGATGTGGAAATGCCCGGAGCTTCTGTCATATATCACCTGGGTGCTGGATTAATTCAAAGCCGATGAGGGAGTTTTTTCGTCAAGAAGCTACCATGCAAACATGGAGGCGTCCATTTTCTTCCGACAGTGGAGATTTGGTCGATGTTGTGGTCCCTCCATTGGCTGAGTCTATTTCTGATGGAACCCTGGCGACATTTTTGAAGAGGCCTGGTGACAGAGTTAATATTGATGAACCAATAGCTCAAATCGAAACAGATAAGGTGACAATTGATGTTTCCAGCCCTGAGTCAGGTGTGATTCTGAAGTTTCTAGCCAATGAAGGGGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGATGCGACCACTCACGTTGCCCCATCTGAGACTACACCTGAGAAAGCTGCTCCTCAGCCAACCCAAAAGATTAGTGAAGAGAAGAAAGCACCTAAAGCTGAAACTGCACCTGTTACAGAGAAGCCCAAGGCAACTCCTGCTCCACATAGCTCTCACTCTGAGCCACAGCTTCCCCCTAAGGAAAGAGAAAGACGAGTTCCTATGACAAGGCTTCGGAAACGAGTGGCCACACGGTTGAAAGATTCCCAAAACACATTTGCTCTGCTGACAACATTCAACGAAGTTGATATGACTAATCTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCTGGATTTATTAAAGCTGCTGTCAATGCACTCCAACATCAGCCGATTGTAAATGCAGTCATTGACGGGGATGATATTATATACAGAGATTACATAGATATCAGTGTAGCTGTTGGTACTTCAAAGGGCCTTGTGGTGCCAGTTATCCGCAATGCTGATACCATGAACTTTGCGGATATAGAAAAGCAGATCAATACTTTTGCAAAGAAGGCAAATGCTGGAACTTTATCAATTGATGAGATGGCTGGAGGAACTCTTACAATATCCAACGGTGGTGTTTATGGGAGCCTTTTGAGTACCCCAATTATCAACCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGTCGACCAATGGTTGTGGGAGGAAATGTTGTGCCAAGGCCAATGATGTACATTGCTCTAACATATGATCATAGAATTATTGATGGAAGAGAGGCAGTGTTCTTTTTGCGACGCATCAAAGATATCGTTGAGGATCCACGAAGACTTCTGCTAGACATATGA 1398 0.4456 MFSIIRRRVASSSPSPLLLGQSVQKFRSGSLVPSRVSSILETEIAFHSGGCGNARSFCHISPGCWINSKPMREFFRQEATMQTWRRPFSSDSGDLVDVVVPPLAESISDGTLATFLKRPGDRVNIDEPIAQIETDKVTIDVSSPESGVILKFLANEGDTVEPGNKIAIISRSADATTHVAPSETTPEKAAPQPTQKISEEKKAPKAETAPVTEKPKATPAPHSSHSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFIKAAVNALQHQPIVNAVIDGDDIIYRDYIDISVAVGTSKGLVVPVIRNADTMNFADIEKQINTFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYIALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0072 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 235 463 IPR001078 GO:0016746
Lal22g0072 465 Gene3D - 221 461 IPR023213 -
Lal22g0072 465 CDD lipoyl_domain 96 169 - -
Lal22g0072 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 120 149 IPR003016 -
Lal22g0072 465 Gene3D - 95 172 - -
Lal22g0072 465 SUPERFAMILY CoA-dependent acyltransferases 235 464 - -
Lal22g0072 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 95 170 IPR000089 -
Lal22g0072 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 465 - -
Lal22g0072 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 465 - -
Lal22g0072 465 SUPERFAMILY Single hybrid motif 95 186 IPR011053 -
Lal22g0072 465 MobiDBLite consensus disorder prediction 194 209 - -
Lal22g0072 465 MobiDBLite consensus disorder prediction 175 192 - -
Lal22g0072 465 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 202 464 IPR006255 GO:0004149|GO:0006099|GO:0045252
Lal22g0072 465 MobiDBLite consensus disorder prediction 174 240 - -
Lal22g0072 465 Pfam Biotin-requiring enzyme 97 169 IPR000089 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0072 Lal-Chr22 424933 431372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0072 74 463 Acyl Lipid Metabolism Gene Families AT1G54220 28.228 1.00e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0072 K00658 - gmx:100799149 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1574 18 17363485 17370664 Lal22g0072 22 424933 431372 ECH
Lal22g0072 22 424933 431372 Lal22g0072 22 424933 431372 ECH
Lal18g1574 18 17363485 17370664 Lal22g0072 22 424933 431372 LSH
Lal22g0072 22 424933 431372 Lal6g0071 6 425228 430384 LSH