Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0204 ATGGAGGCGCCGCCGTTTGCTTCTTCTGCTTCCTCTTCTTTCATTCGCAGCAAACCTCTCTCATCCACACGATTCTCCCAAAATGTCAATGTCAAATACCCTAAGAACTTCTCAGTTCGCGCTTCTTCTTCTGAGGATTCTGTTGTGACTTTGCTTGATTATGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCTATCAGATTCCTCGGGTTTGACATCAAAGATGTGCAAACTCCACAAGACATTTTGAATGCGAGCCGGCTAGTCTTTCCAGGTGTTGGAGCATTTGCTGCTGCCATGGAGGTCTTAAGCAAAACTGGGATGGATGAGGCACTATGTTCATATATTGAAAAGGACCGCCCATTTTTAGGCATTTGTCTTGGACTTCAATTACTTTTTGAATCTAGTGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGAACTGTTGGGAGATTTGACTCATCAAATGGTTTTAGAGTACCACATATTGGCTGGAATGCTTTACATGTCACACCGGACTCCAGAATCTTGGACGATGTTGGAAATAGCCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTTCAGATGACAACAAAGAGTGGGTATCCTCCACCTGCAACTATGGTGACAAATTTATAGCCTCTGTTAGAAGAGGAAACGTGCATGCAGTTCAGTTTCATCCAGAGAAGAGCGGAGATGTTGGCCTTTCTATTTTGAAAAGATTCTTGAATCCAAAGTCAAACTTGGCGAAGAAGCCTGGTGAAGGCAAAGCTTCAAAACTAGCAAAAAGGGTGATTGCTTGCCTTGATGTGAGAACAAATGATACGGGGGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGGAATCTTGGCAAGCCAATTGATCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACTGGATTTCGCGACTTCCCTCTTGGTGATTTACCAATGTTGCAGGTATTGCGATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGGGGAGGAATTAGAGATTTCACTGATTCAAATGGAAGGTACTATTCTAGTTTGGAAGTTGCTGCAGAATATTTTAGGTCTGGGGCTGATAAGATTTCCATTGGAAGTGATGCAGTATATGCTGCAGAAGAATATATTAGAACTGGTGTAAAGACTGGGAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAGGCAGTGGTTGTGAGTATTGATCCCCGTAGAGTGTATGTAAAGGATCCTAATGATGTGCAATTCAAGACTGTAAGGGTTTCGAGTCTAGGTCCAAATGGAGAAGAATATGCATGGTATCAGTGTACAGTTAATGGGGGGCGAGAAGGCCGACCAATTGGTGCTTATGAACTAGCAAGAGCAGTTGAAGAGCTTGGTGCTGGAGAAATACTACTTAATTGCATTGATTGCGATGGTCAAGGGAAAGGATTTGATGTAGATTTAATTCAGTTGATCTCAGATGCTGTAAGTATCCCTGTGATTGCAAGTAGCGGTGCGGGTGCTCCTGAACACTTTTCTGAGGTGTTTAGTAAAACAAATGCATCAGCTGCACTTGCTGCTGGCATTTTTCATAGGAAGGAGGTGCCTATTCAGTCGGTAAAGGAGCATCTGTTGAAGGAAGGCATAGAAGTCCGAATCTGA 1707 0.4312 MEAPPFASSASSSFIRSKPLSSTRFSQNVNVKYPKNFSVRASSSEDSVVTLLDYGAGNVRSVRNAIRFLGFDIKDVQTPQDILNASRLVFPGVGAFAAAMEVLSKTGMDEALCSYIEKDRPFLGICLGLQLLFESSEENGPVKGLGLIPGTVGRFDSSNGFRVPHIGWNALHVTPDSRILDDVGNSHVYFVHSYRAMPSDDNKEWVSSTCNYGDKFIASVRRGNVHAVQFHPEKSGDVGLSILKRFLNPKSNLAKKPGEGKASKLAKRVIACLDVRTNDTGDLVVTKGDQYDVRNLGKPIDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSNGRYYSSLEVAAEYFRSGADKISIGSDAVYAAEEYIRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVKDPNDVQFKTVRVSSLGPNGEEYAWYQCTVNGGREGRPIGAYELARAVEELGAGEILLNCIDCDGQGKGFDVDLIQLISDAVSIPVIASSGAGAPEHFSEVFSKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0204 568 SUPERFAMILY Ribulose-phoshate binding barrel 264 567 IPR011060 -
Apr2g0204 568 CDD HisF 267 562 IPR004651 GO:0000105|GO:0000107
Apr2g0204 568 Gene3D Aldolase class I 269 568 IPR013785 -
Apr2g0204 568 SUPERFAMILY Class I glutamine amidotransferase-like 48 248 IPR029062 -
Apr2g0204 568 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 49 247 IPR010139 GO:0000105|GO:0016763
Apr2g0204 568 CDD GATase1_IGP_Synthase 49 247 IPR010139 GO:0000105|GO:0016763
Apr2g0204 568 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 60 568 - -
Apr2g0204 568 Pfam Glutamine amidotransferase class-I 51 246 IPR017926 -
Apr2g0204 568 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 265 567 IPR004651 GO:0000105|GO:0000107
Apr2g0204 568 Gene3D - 44 268 IPR029062 -
Apr2g0204 568 Pfam Histidine biosynthesis protein 268 550 IPR006062 GO:0000105
Apr2g0204 568 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 60 568 - -
Apr2g0204 568 ProSiteProfiles CobBQ-type GATase domain profile. 28 239 - -
Apr2g0204 568 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 48 256 - -
Apr2g0204 568 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 48 249 IPR010139 GO:0000105|GO:0016763
Apr2g0204 568 PIRSF IGPS_HisHF 46 568 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0204 K01663 - gmx:100500353 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0204 2 2610817 2620107 Apr2g0204 2 2610817 2620107 ECH