Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00312 ATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCTCATCTTCGTATTTAGGTCAGTCAGTGCAGAAAATCCGGTCTGGCCCATCAGCTCCTGCTAGAGTTTCTTCCATTGTGGAAAGAGAGATTGCATTTCCTTCAGGAGGATGTGGAAATGTCCGGAACTTCTGTCGTATAACACCAGGATGCTGGATTAATTCAAAACCTATAAGGGGTGTTTTCCATCAAGAGGCTACCATGCAAACATGGAGGCGTTCATTTTCTTCAGATAGTGGAGACAGTGTTGATGTTGTGGTCCCTCCATTGGCTGAATCTATCGCTGATGGAACTCTGGCAAAATTTCTGAAGAGACCTGGTGACAGGGTTAATGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTGACAATTGATGTTTCAAGTCCTGAGTCAGGTGTGATTGTGAAGCTTCTAGTCAATGAAGGGGATACTGTTGAGCCAGGTAACAAAATAGCAATCATTTCAAGGTCTGCCGATGCTACAACCCATGTTGCACCATCTGAGACTACATCTGAGAAAGCTGCTCCTCGACCAACCCAAAAGGTCAGTGAGACCGAGGAGAAGAAAGCACCAAAAGTTGAAACTGCTCCTCCTGTTACTGAGAAGCCCAAAGCACCTCCTGCTCCACGGAGCTCTCCTACTGAGCCACAGCTTCCCCCTAAGGAAAGAGAAAGACGAGTTCCTATGACAAGGCTTCGGAAGCGAGTTGCTACAAGATTGAAAGATTCCCAAAACACATTTGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAACTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCCGGGTTTATCAAAGCTGCTGTCAATGCCCTTCAACACCAGCCAATTGTAAATGCAGTAATTGATGGGGATGATATCATATACAGAGATTATATAGATATCAGCATAGCTGTTGGTACTCCAAAGGGACTTGTTGTGCCAGTTATCCGCAATGCTGATACATTGAACTTTGCGGATATAGAAAAGCAGATCAATGCTTTTGCAAAAAAGGCAAATGATGGATCGTTATCAATTGATGAGATGGCTGGAGGAACCCTTACAATATCAAATGGTGGTGTTTATGGGAGCCTTTTGAGTACCCCTATTATCAACCCACCTCAGTCTGCAATCTTGGGTATGCATTCCATAGTGAGCCGTCCGATGGTTGTTGGAGGAAATGTTGTCCCAAGGCCAATGATGTACATTGCTCTAACATATGACCATAGAATTATTGATGGAAGAGAGGCAGTGTTCTTTCTGCGACGCATCAAGGATATTGTGGAGGATCCTCGCAGGCTTCTGCTTGACATTTAA 1404 0.4387 MFGVVRRRVASGSSSSYLGQSVQKIRSGPSAPARVSSIVEREIAFPSGGCGNVRNFCRITPGCWINSKPIRGVFHQEATMQTWRRSFSSDSGDSVDVVVPPLAESIADGTLAKFLKRPGDRVNVDEPIAQIETDKVTIDVSSPESGVIVKLLVNEGDTVEPGNKIAIISRSADATTHVAPSETTSEKAAPRPTQKVSETEEKKAPKVETAPPVTEKPKAPPAPRSSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFIKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTLNFADIEKQINAFAKKANDGSLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYIALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00312 467 MobiDBLite consensus disorder prediction 214 230 - -
Seca8g00312 467 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 230 465 - -
Seca8g00312 467 SUPERFAMILY CoA-dependent acyltransferases 237 466 - -
Seca8g00312 467 Gene3D - 93 171 - -
Seca8g00312 467 Gene3D - 223 463 IPR023213 -
Seca8g00312 467 NCBIfam dihydrolipoyllysine-residue succinyltransferase 218 466 IPR006255 GO:0004149|GO:0006099|GO:0045252
Seca8g00312 467 MobiDBLite consensus disorder prediction 193 209 - -
Seca8g00312 467 SUPERFAMILY Single hybrid motif 95 185 IPR011053 -
Seca8g00312 467 CDD lipoyl_domain 95 168 - -
Seca8g00312 467 ProSiteProfiles Biotinyl/lipoyl domain profile. 94 169 IPR000089 -
Seca8g00312 467 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 237 465 IPR001078 GO:0016746
Seca8g00312 467 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 119 148 IPR003016 -
Seca8g00312 467 MobiDBLite consensus disorder prediction 171 244 - -
Seca8g00312 467 Pfam Biotin-requiring enzyme 96 168 IPR000089 -
Seca8g00312 467 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 71 466 - -
Seca8g00312 467 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00312 Seca-Chr8 3671388 3678060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00312 71 465 Acyl Lipid Metabolism Gene Families AT1G54220 27.669 1.99e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00312 K00658 - gmx:100799149 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00312 8 3671388 3678060 Seca8g00312 8 3671388 3678060 ECH