Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02728 ATGCTTGGTGTTATAAGGCGAAGAGTTGCTTCTGGCAGCTCGTCTCCTTTGTTTCTAGGTCACTCAGTGCAAGCAATCCGGTCTGGTCCGTCAGTTACTCGTAGAGTTTCTCCGATTGTGGAAAAAGagATTGCTTACCATTCAGGAGGATGTGGGACTGTCCGCAATTTCTGTGATATAGCATCATCTGGCCGCTTGCTTAATCTAAAACGTATAAGGGAGGTCATTTCCAGTAATTGTCAAGGGGTCACCATGCAATTGTGGAGGCGCTCATTTTCTTCAGATAATGGTGATCTTGTTGATGTTGTGGTCCCTCCACTAGCTGAATCTATTTCTGATGGAACTTTGGCAAAATTCTTGAAGAAGCCAGGTGATAGTGTTAAAGTTGATGAGCCAATTGCTCAAATTGAAACTGATAAGGTGACAATTGATGTCTCTAGTCCTGAGACAGGCGTGATTCAGAAGCTTCTAGCCAATGAAGGTGATACTGTCGAACCGGGTAACAAGATTGCAATCATTTCAAGATCTGCTGATGCAACTCATGTTGCCCCATCTGAGAGTACATCTGAGAAAGTGGCTCCTCAGCCAACCCAAAACACTAGTGTGGAGAAGAAAGATGCTAAAGTTGAAACTGCCCCTACAGCGGAGAAACCCAAAACACCTgcacctcctcctcctcctcctccaaaGCGCTCTCCCTCTGAACCACAGCTTCCCCctaaggaaagagaaagacgAGTTCCCATGACAAGACTCAGGAAACGTGTTGCTACACGGTTAAAAGATTCCCAAAACACATTTGCTATGCTGACAACATTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTTCTGATTATAAGGATGCCTTTGTTGAAAAGCATGGAGTAAAGTTGGGACTTATGTCAGGGTTTGTCAAAGCTGCTGTCACTGCTCTCCAACATCAGCCCATTGTAAATGCGGTCATTGATGGGGATGATATAATATACAGAGACTATATTGATATCAGCATAGCTGTTGGTACTTCAAAGGGTCTTGTTGTGCCAGTAATCCGTGAAGCTGGTAGAATGAACTTTGCGGATATAGAAAAGGAGATCAACACTCTCGCAAAGAAGGCAAATGATGGAACATTATCAATTGATGAAATGGCTGGAGGCTCTTTCACAATTTCAAATGGTGGTGTTTATGGGAGTCTTTTGAGTACCCCTATTATCAACCCTCCTCAGTCTGCTATCTTGGGTATGCACTCCATTGTGACCCGCCCAATGGTTGTTGGAGGTAATGTTGTCCCAAGGCCAATGATGTATGTTGCTTTAACATACGACCACAGAATAATTGATGGAAGAGAGGCAGTGTTCTTCTTGCGTCGTATCAAAGATGTGGTGGAGGATCCTCGTAGGCTTCTGCTTGACTTATG 1421 0.4229 MLGVIRRRVASGSSSPLFLGHSVQAIRSGPSVTRRVSPIVEKEIAYHSGGCGTVRNFCDIASSGRLLNLKRIREVISSNCQGVTMQLWRRSFSSDNGDLVDVVVPPLAESISDGTLAKFLKKPGDSVKVDEPIAQIETDKVTIDVSSPETGVIQKLLANEGDTVEPGNKIAIISRSADATHVAPSESTSEKVAPQPTQNTSVEKKDAKVETAPTAEKPKTPAPPPPPPPKRSPSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGLMSGFVKAAVTALQHQPIVNAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIREAGRMNFADIEKEINTLAKKANDGTLSIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVTRPMVVGGNVVPRPMMYVALTYDHRIIDGREAVFFLRRIKDVVEDPRRLLLDL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02728 473 Gene3D - 99 176 - -
Bva12g02728 473 MobiDBLite consensus disorder prediction 217 235 - -
Bva12g02728 473 CDD lipoyl_domain 100 173 - -
Bva12g02728 473 ProSiteProfiles Biotinyl/lipoyl domain profile. 99 174 IPR000089 -
Bva12g02728 473 MobiDBLite consensus disorder prediction 176 252 - -
Bva12g02728 473 SUPERFAMILY Single hybrid motif 99 185 IPR011053 -
Bva12g02728 473 Pfam Biotin-requiring enzyme 101 173 IPR000089 -
Bva12g02728 473 Gene3D - 230 469 IPR023213 -
Bva12g02728 473 MobiDBLite consensus disorder prediction 180 202 - -
Bva12g02728 473 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 216 472 IPR006255 GO:0004149|GO:0006099|GO:0045252
Bva12g02728 473 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 243 471 IPR001078 GO:0016746
Bva12g02728 473 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 124 153 IPR003016 -
Bva12g02728 473 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 473 - -
Bva12g02728 473 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 473 - -
Bva12g02728 473 MobiDBLite consensus disorder prediction 236 252 - -
Bva12g02728 473 SUPERFAMILY CoA-dependent acyltransferases 243 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02728 Bva-Chr12 19904199 19910891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02728 90 471 Acyl Lipid Metabolism Gene Families AT1G54220 29.621 9.13e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02728 K00658 - gmx:100799149 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02728 12 19904199 19910891 Bva12g02728 12 19904199 19910891 ECH