Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01019 ATGGAGGCGCCACCATTTACTTCCCCTTCTTCTCTTCTCCTCCGTCCTAAAACACCACTCTCCTTCACTACATTCTCTCATTCTGCCAAAGTCAAAAACCCAACCAATTTCTCCATTCGTGCTTCCTCTTCTAAAGATTCTGTTGTGACTTTACTTGATTATGGTGCTGGCAATGTTCGGAGTGTGAGGAATGCTATCAAATTCCTTGGATTTGAAATCAAAGATGTGCAAACCCCAGAAGACATTTTGAATGCAAGCCGTTTGATTTTTCCGGGTGTTGGAGCATTTGCACCTGCTATGGAGGTGTTAAGTAAAACTGGAATGGGTGAAGCACTATGTTCATATATTGAAAAGGATCGCCCTTTTTTAGGCATTTGTCTTGGACTTCAATTGCTTTTTGAATCCAGTGAGGAGAATGGACTAATAAAAGGTCTCGGCTTAATACCTGGAACCGTTGGGCGATTTGATTCATCAAATGGTTTTAGAGTACCACATATTGGATGGAATGCTTTACAAGTTGCAAAGGACTCGGAAATTTTGGATGATGTTGGAAACCGCCATGTCTATTTTGTGCACTCTTACCGTGCCATGCCTTCAGATGATAATAAAGAGTGGATATCCTCCACCTGTAAGTACGGTGATGAGTTTATAGCATCTATTAGAAGAGGAAATGTGCATGCAGTTCAGTTCCATCCAGAAAAGAGTGGAGATGTGGGTCTCTCTGTTTTGAGAAGATTCTTGTATCCGAAATCAAAAGTGGAAAAGAAGCTTGGTGAAGGCAAAGCTTCAAAACTCGCGAAAAGGGTGATTGCTTGTCTCGATGTGAGAGCAAATGATAAGGGAGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAAAATACTAAAGAGAATGAGGTTAGGAATCTTGGCAAGCCAGTTGAACTTGCTGAACAGTACTATAAAGATGGAGCTGACGAGGTCAGCTTTCTAAACATCACTGGATTTCGCGACTTCCCTCTAGGTGATTTACCGATGTTGCAGGTATTGCGATACACATCAGAAAATGTTTTTGTTCCCTTAACAGTTGGGGGTGGAATAAGAGATTTTACAGATTCAACAGGAAGGCACTATTCTAGTTTGGAAGTAGCTGCAGAGTATTTTAGGTCTGGGGCTGATAAGATATCCATTGGAAGTGATGCAGTTTATGCCGCTGAAGAATATATAAGAACTGGAGTTAAGACGGGAAAGACCAGCTTAGAGCAGATATCAAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGTAGGGTTTACGTAAACAACCCAAATGATGTGCAATTCCAGACTATAAGGGTTTCAAGTCCAGGTCCAAATGGAGAAGAATATGCTTGGTATCAGTGTACGGTTAATGGGGGGCGAGAAGGCCGGCCAATTGGTGCTTATGAACTAGCAAAAGCTGTTGAAGAGCTTGGTGCTGGAGAAATACTACTTAACTGCATCGATTGTGATGGTCAAGGAAAAGGATTTGATGTAGATTTAATAAAGTTGATCTCAGATGCTGTAAATATCCCTGTGATTGCAAGTAGTGGTGCTGGCGTTCCTGAGCACTTTTCTGAGGTGTTTACTAAAACCAATGCATCCGCTGCACTTGCTGCTGGCATTTTTCACAGGAAGGAGGTGCCTATTCAGTCCGTGAAAGGACATTTGTCGAAAGAAGATATAGAAGTCCGAATGTGA 1734 0.4198 MEAPPFTSPSSLLLRPKTPLSFTTFSHSAKVKNPTNFSIRASSSKDSVVTLLDYGAGNVRSVRNAIKFLGFEIKDVQTPEDILNASRLIFPGVGAFAPAMEVLSKTGMGEALCSYIEKDRPFLGICLGLQLLFESSEENGLIKGLGLIPGTVGRFDSSNGFRVPHIGWNALQVAKDSEILDDVGNRHVYFVHSYRAMPSDDNKEWISSTCKYGDEFIASIRRGNVHAVQFHPEKSGDVGLSVLRRFLYPKSKVEKKLGEGKASKLAKRVIACLDVRANDKGDLVVTKGDQYDVRENTKENEVRNLGKPVELAEQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSTGRHYSSLEVAAEYFRSGADKISIGSDAVYAAEEYIRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVNNPNDVQFQTIRVSSPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVNIPVIASSGAGVPEHFSEVFTKTNASAALAAGIFHRKEVPIQSVKGHLSKEDIEVRM 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01019 577 SUPERFAMILY Ribulose-phoshate binding barrel 264 576 IPR011060 -
Car05g01019 577 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 265 576 IPR004651 GO:0000105|GO:0000107
Car05g01019 577 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 48 256 - -
Car05g01019 577 SUPERFAMILY Class I glutamine amidotransferase-like 48 248 IPR029062 -
Car05g01019 577 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 60 577 - -
Car05g01019 577 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 49 247 IPR010139 GO:0000105|GO:0016763
Car05g01019 577 CDD GATase1_IGP_Synthase 49 247 IPR010139 GO:0000105|GO:0016763
Car05g01019 577 PIRSF IGPS_HisHF 46 577 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Car05g01019 577 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 48 249 IPR010139 GO:0000105|GO:0016763
Car05g01019 577 Gene3D Aldolase class I 270 577 IPR013785 -
Car05g01019 577 CDD HisF 267 571 IPR004651 GO:0000105|GO:0000107
Car05g01019 577 Pfam Histidine biosynthesis protein 268 559 IPR006062 GO:0000105
Car05g01019 577 Gene3D - 44 269 IPR029062 -
Car05g01019 577 ProSiteProfiles CobBQ-type GATase domain profile. 40 239 - -
Car05g01019 577 Pfam Glutamine amidotransferase class-I 51 246 IPR017926 -
Car05g01019 577 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 60 577 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01019 K01663 - gmx:100500353 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01019 05 50938553 50947206 Car05g01019 05 50938553 50947206 ECH