Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0051 ATGTTTGGTGTCGCAAGACGAAGGGTTGCTTCTGTTGGCACATCTTCGTTGCTTGGTCAGTCAGGTCTGAAATTCAGGTCTGGTCCTGCTAGAGTTTCTTCCATTTTGGAAAAAGAGATTGCAATAAGCTCAGGAGGATGTGGAAATATCCGGAATTTCTGTCATATAATACCTGGACGCTGGATTAATTCAAAACCAATAAGTGACATTTTTCATCAAGAGGCTTCAATTCAAACATGGAAGCGTTCATTTTCTTCGGATAGTGGAGATAATGTTGATGTTGTGGTCCCTCCATTGGCTGAATCCATCGAGGATGGGACTCTCGCAAAATTTCTGAAGAGGCCTGGTGACAGGGTTAATGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTGACAATTGATGTTACGAGTCCTGAGTCAGGTGTCATTCTAAAGCTTCTAGCCAATGAAGGAGATACTGTTGAGCCAGGTCACAAGATAGCAATCATTTCAAGGTCTGCTGATGCAACTCACGTTGCGCCATCTGAGAATGCACCTGAGAAACCTGCTCCTAAGCCAACTCCAAAGGCTAGTGAGCCAGAGAAGAAAACTCCTAAAGTTGAAACTACTCCAAAGGCTAGTGAGCCAGAGAAGCCTAAAGCACCTGCTCCGTCAAGCTCTCCATCTGAGCCACAACTTCCTCCTAAGGATAGAGAAAGACGAGTTCTTATGACAAGGCTTCGGAAGCGGGTTGCTATACGATTGAAGGATGCCCAAAACACATATGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTGCTGATCATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCCGGGTTTATCAAAGCTGCTGTCAATGCTCTTCAATATCAACCGATTGTAAATGCAGTCATTGATGGGGAGGATATTATATACAGAGATTACATCGATATAAGCATAGCTGTTGGAACTCCAAAGGGACTTGTTGTGCCTGTTATCCGCAATGCTGATACAATGAACTTCGCGGATATAGAAAAACAGATCAACACTTTAGCCAAGAAGGCTAATGCTGGAGCTTTATCAATTGATGAGATGGCTGGAGGCACTTTTACAATATCAAATGGTGGTGTTTATGGCAGTCTTTTGAGTACACCTATTATCAACCCCCCTCAGTCGGCAATCGTGGGTATGCATTCCATAGTTACCCGTCCAATGGTTGTTGGAGGAGTTGTTGTTCCAAGGCCAATGATGAACATTGCTCTAACATATGACCATAGAATCATTGATGGAAGAGAGGCAGTGTTCTTTTTGAGACGCATCAAAGATTGCGTGGAGGACCCTCGCAGGCTTTTGCTCGACTTATAA 1392 0.4318 MFGVARRRVASVGTSSLLGQSGLKFRSGPARVSSILEKEIAISSGGCGNIRNFCHIIPGRWINSKPISDIFHQEASIQTWKRSFSSDSGDNVDVVVPPLAESIEDGTLAKFLKRPGDRVNVDEPIAQIETDKVTIDVTSPESGVILKLLANEGDTVEPGHKIAIISRSADATHVAPSENAPEKPAPKPTPKASEPEKKTPKVETTPKASEPEKPKAPAPSSSPSEPQLPPKDRERRVLMTRLRKRVAIRLKDAQNTYAMLTTFNEVDMTNLMKLRADHKDAFVEKHGVKLGLMSGFIKAAVNALQYQPIVNAVIDGEDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINTLAKKANAGALSIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAIVGMHSIVTRPMVVGGVVVPRPMMNIALTYDHRIIDGREAVFFLRRIKDCVEDPRRLLLDL* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0051 463 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 463 - -
Tpr4g0051 463 Gene3D - 218 459 IPR023213 -
Tpr4g0051 463 MobiDBLite consensus disorder prediction 189 210 - -
Tpr4g0051 463 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 233 461 IPR001078 GO:0016746
Tpr4g0051 463 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 463 - -
Tpr4g0051 463 Pfam Biotin-requiring enzyme 93 165 IPR000089 -
Tpr4g0051 463 SUPERFAMILY CoA-dependent acyltransferases 233 462 - -
Tpr4g0051 463 CDD lipoyl_domain 92 165 - -
Tpr4g0051 463 SUPERFAMILY Single hybrid motif 92 184 IPR011053 -
Tpr4g0051 463 MobiDBLite consensus disorder prediction 169 236 - -
Tpr4g0051 463 MobiDBLite consensus disorder prediction 212 226 - -
Tpr4g0051 463 ProSiteProfiles Biotinyl/lipoyl domain profile. 91 166 IPR000089 -
Tpr4g0051 463 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 195 462 IPR006255 GO:0004149|GO:0006099|GO:0045252
Tpr4g0051 463 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 116 145 IPR003016 -
Tpr4g0051 463 Gene3D - 90 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0051 42 461 Acyl Lipid Metabolism Gene Families AT3G13930 29.713 2.26e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0051 K00658 - gmx:100799149 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0051 4 493458 499359 Tpr4g0051 4 493458 499359 ECH