Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01112 aTGGAGGCGCCGCCATTTGcttcttctgcttcctcttcctctctcttctctcttcGCAACAAACCACTCCTACCCGCGAGATTCTCCCATTTAGGCAATACCAAACAATCCAGAAACTTCTCTGTTCGCGCCTCCTCTTCTTCTGGGGATTCTGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCTATCAGATTCCTAGGGTTTGATATTAAAGACGTGCAAACTCCAGAAGATATTTTGAATGCAAATCGGTTAGTTTTTCCAGGTGTTGGAGCATTCGCTGCGGCCATGGAGGTGTTGAGCAAAACTGGAATGGATGAAGCACTATGTTCATATATTGAAAAGGATCGCCCATTTTTGGGCATTTGTCTTGGGCTTCAACTACTTTTTGAATCTAGTGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGAACTGTTGGGCGATTTGACTCATCAAATGGTTTTAGAGTGCCACATATTGGCTGGAATGCTTTACAAATCACATCAAACTCGGGAATTTTGGATGATGTTGGAAATCACCATCTCTATTTTGTGCACTCTTATCGTGCCATGCCTTCAGATGACAACAATAAATGGATATCCTCCACCTGTGACTATGGTGACAAATTTATAGCATCTATTAGAAGAGGGAATGTGCACGCAGTTCAATTTCATCCTGAGAAAAGCGGAGATGTTGGTCTCTCTATTTTGAGAAGATTCTTGAATCCGAAGTCAAATGTGGCAAAGAAGCTTGGAGAAGGCAAAGCTTCAAAACTTGCAAAAAGGGTGATTGCTTGTCTTGATGTGAGAGCAAATGATAAGGGGGACCTTGTTGTAACCAAAGGAGATCAGTATGATGTAAGAGAACATACAGAAGAGAATGAGGTTAGAAATCTTGGCAAGCCAGTTGATCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACTGGATTTCGTGACTTCCCTCTCGGTGATTTACCAATGCTGCAGGTATTGCAATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGGGGAGGAATTAGAGATTTCACAGATTCCAATGGAAGGTACTATTCTAGTTTAGAAGTTGCCTCAGAATATTTTAGGTCTGGGGCTGATAAGATTTCCATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATATATAAGAACCGGAGTGAAGACTGGGAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGTAGAGTGTATATAAAGGATCCTAATGATGTGCAATTAAAGACCGTAAGGGTTTCAAGTCTAGGTCCAAATGGAGAAGAATATGCATGGTATCAGTGTACAGTTAATGGAGGGCGAGAAGGTAGACAAATTGGTGCTTATGAACTAGCAAAAGCAGTTGAAGAGCTTGGTGCTGGAGAAATACTACTTAATTGCATCGATTGTGATGGTCAAGGGAAGGGATTTGATGTTGATTTAATTAAGTTGATATCAGATGCTGTTAGTATCCCTGTGATCGCAAGTAGTGGTGCTGGAGCTCCTGAACACTTTTCTGAGGTTTTCAATAAAACAAATGCATCAGCAGCACTTGCTGCTGGCATTTTTCACAGGAAGGAGGTTCCTATTCAGTCGGTAAAAGAGCATCTGTTGAAGGAAGGCATAGAAGTCCGGATCTGA 1746 0.4101 MEAPPFASSASSSSLFSLRNKPLLPARFSHLGNTKQSRNFSVRASSSSGDSVVTLLDYGAGNVRSVRNAIRFLGFDIKDVQTPEDILNANRLVFPGVGAFAAAMEVLSKTGMDEALCSYIEKDRPFLGICLGLQLLFESSEENGPVKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITSNSGILDDVGNHHLYFVHSYRAMPSDDNNKWISSTCDYGDKFIASIRRGNVHAVQFHPEKSGDVGLSILRRFLNPKSNVAKKLGEGKASKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTEENEVRNLGKPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLQYTSENVFVPLTVGGGIRDFTDSNGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYIKDPNDVQLKTVRVSSLGPNGEEYAWYQCTVNGGREGRQIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVSIPVIASSGAGAPEHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01112 581 Pfam Glutamine amidotransferase class-I 55 250 IPR017926 -
Cca09g01112 581 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 64 581 - -
Cca09g01112 581 PIRSF IGPS_HisHF 50 581 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Cca09g01112 581 SUPERFAMILY Class I glutamine amidotransferase-like 52 252 IPR029062 -
Cca09g01112 581 CDD GATase1_IGP_Synthase 53 251 IPR010139 GO:0000105|GO:0016763
Cca09g01112 581 Pfam Histidine biosynthesis protein 272 563 IPR006062 GO:0000105
Cca09g01112 581 Gene3D - 49 273 IPR029062 -
Cca09g01112 581 CDD HisF 271 575 IPR004651 GO:0000105|GO:0000107
Cca09g01112 581 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 52 260 - -
Cca09g01112 581 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 53 251 IPR010139 GO:0000105|GO:0016763
Cca09g01112 581 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 64 581 - -
Cca09g01112 581 SUPERFAMILY Ribulose-phoshate binding barrel 268 580 IPR011060 -
Cca09g01112 581 Gene3D Aldolase class I 274 581 IPR013785 -
Cca09g01112 581 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 269 580 IPR004651 GO:0000105|GO:0000107
Cca09g01112 581 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 52 253 IPR010139 GO:0000105|GO:0016763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01112 K01663 - gmx:100500353 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01112 09 32177543 32188618 Cca09g01112 09 32177543 32188618 ECH