Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00390 ATGGAGGCGCCGTCTTTTGCTTATTCTGCTTCCTCTTCCTCTCTCCTCTCTCTGCGCAAAACGCCACTCTCATCTCCGAGATTATCCTGTTTGGGCAATACCAAACACAGAAACTTCTCAGTTCGTGCCTCCTCTTCTGGGGATTCTGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGAAATCAAAGATGTACAAACCCCGCAAGATATTTTGAATGCAAGTCGGTTAGTTTTTCCTGGGGTTGGAGCATTTGCTGCCGCCATGGAGGTGTTAAGCAAAACTGGAATGGACGAAGCATTATGTTCATATATTGAAAAAGATCGTCCATTTTTGGGGATTTGTCTAGGACTTCAGCTACTTTTTGAATCTAGTGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTGATACCTGGAACTGTTGGGCGATTTGACTCATCAAATGGTTTTAGAGTACCACATATTGGCTGGAATGCTTTACAAATCACGAAGGACTCAGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTTCAGATGACAACAGTGAGTGGATATCCTCCACATGTGACTATGGTGACAAATTTATAGCATCTATTAGAAGAGGAAATGTTCATGCAGTTCAATTCCACCCAGAGAAGAGTGGAGATGTTGGTCTCTCAATTTTGAGAAGATTCTTGAATCCGAAGTCAAACATGACAAAGAAGCCTGGGGAAGTCAAAGCTTCAAAACTTGCAAAAAGGGTGATTGCTTGTCTTGATGTGAGAGCAAACGATAAAGGGGACCTTGTTGTAACCAAAGGAGATCAGTATGATGTAAGAGAACATACAAATGAGAACGAGGTAAGGAATCTTGGCAAGCCAGTTGATCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACAGGATTTCGGGACTTCCCTCTTGGTGATTTACCTATGCTTCAGGTATTACGATACACATCAGAAAATGTTTTTGTACCTTTAACTGTCGGTGGAGGAATTAGAGATTTCACAGATTCAACCGGAAGGTACTATTCTAGTTTGGAAGTTGCTTCAGAATACTTTAGGTCTGGGGCTGATAAGATTTCCATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATATTTAAGAACCGGAGTAAAAACTGGAAAGACCAGCTTGGAGCAGATAGCAAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGTAGAGTGTATGTAAAGGATCCTAATGATGTGCTATTGAAGACCGTAAGGGTTTCAAATCTAGGTCCAAATGGAGAAGAGTATGCATGGTATCAATGTACAGTTAATGGAGGGAGAGAAGGCCGACCAATTGGTGCCTATGAACTAGCAAAAGCAGTTGAAGAGCTTGGCGCTGGAGAAATACTACTTAATTGCATCGATTGTGATGGTCAAGGGAAAGGATTTGATGTAGATTTAATTAAGTTGATATCAGACGCTGTAAGTATCCCTGTGATTGCAAGTAGTGGTGCTGGCGCTCCTGCACACTTTTCTGAGGTGTTCAATAAAACAAATGCATCAGCAGCACTTGCTGCTGGCATTTTTCATAGGAAAGAGGTGCCTATTCAGACTGTAAAAGAGCATTTGTTGAAGGAAGGCATTGAAGTCCGAATCTAA 1740 0.4207 MEAPSFAYSASSSSLLSLRKTPLSSPRLSCLGNTKHRNFSVRASSSGDSVVTLLDYGAGNVRSVRNAIRFLGFEIKDVQTPQDILNASRLVFPGVGAFAAAMEVLSKTGMDEALCSYIEKDRPFLGICLGLQLLFESSEENGPVKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITKDSGILDDVGNHHVYFVHSYRAMPSDDNSEWISSTCDYGDKFIASIRRGNVHAVQFHPEKSGDVGLSILRRFLNPKSNMTKKPGEVKASKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTNENEVRNLGKPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSTGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKTSLEQIARVYGNQAVVVSIDPRRVYVKDPNDVLLKTVRVSNLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVSIPVIASSGAGAPAHFSEVFNKTNASAALAAGIFHRKEVPIQTVKEHLLKEGIEVRI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00390 579 FunFam Imidazole glycerol phosphate synthase hisHF 46 271 - -
Vian6g00390 579 NCBIfam imidazole glycerol phosphate synthase subunit HisF 267 578 IPR004651 GO:0000105|GO:0000107
Vian6g00390 579 SUPERFAMILY Class I glutamine amidotransferase-like 50 250 IPR029062 -
Vian6g00390 579 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 50 258 - -
Vian6g00390 579 Pfam Histidine biosynthesis protein 270 561 IPR006062 GO:0000105
Vian6g00390 579 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 263 579 - -
Vian6g00390 579 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 50 251 IPR010139 GO:0000105|GO:0016763
Vian6g00390 579 Gene3D - 47 271 IPR029062 -
Vian6g00390 579 Gene3D Aldolase class I 272 579 IPR013785 -
Vian6g00390 579 SUPERFAMILY Ribulose-phoshate binding barrel 266 578 IPR011060 -
Vian6g00390 579 NCBIfam imidazole glycerol phosphate synthase subunit HisH 51 249 IPR010139 GO:0000105|GO:0016763
Vian6g00390 579 CDD HisF 269 573 IPR004651 GO:0000105|GO:0000107
Vian6g00390 579 CDD GATase1_IGP_Synthase 51 249 IPR010139 GO:0000105|GO:0016763
Vian6g00390 579 FunFam Imidazole glycerol phosphate synthase hisHF 269 579 - -
Vian6g00390 579 PIRSF IGPS_HisHF 48 579 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Vian6g00390 579 Pfam Glutamine amidotransferase class-I 53 248 IPR017926 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00390 K01663 - gmx:100500353 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00390 6 16797119 16815052 Vian6g00390 6 16797119 16815052 ECH