Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0230 ATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGCTTCTAGGTCAGTCAGTTCAGAAAATTCGGTCTGGCCTTTCTGTTTCTGCTAGAGTTTCTTCCACGGTTGAGAAAGAGATTGCAATTCATTCAGGCGGATGTGGATTTGTAAGGAACTTTTGTAATATAACACCTGGATGCGGGACTAATTCTAAAGCTATGAGTGTGGTTTTTCATCCAAGGTCAGAAGCTGTTCGAACCTGGGGGCGTCCATTTTCTTCAGACAGTGGAGATACGGTTGATGTTGTGGTCCCTCCTCTAGCTGAATCTATCTCTGATGGAACTCTGGCAAATTTTTTGAAGAGGCCTGGTGACAGGGTTAATGCTGATGAGCCAATTGCTCAAATTGAAACAGATAAGGTGACGATTGATGTTTCAAGTCCGGAGTCAGGTGTCATTCTGAAGTTTCTAGCCAATGAAGGAGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGACGCAACTCATGTTGCTCCATCTGAGACTACACCGGAGAAAGGAGCTCCTCAGCCAACTCAAAAGGTTAGCGAGGAGAAGAAAGCTCCCAAAGTTGAAACTCAACCTGCTAAAGAGAAGCCCAAACCACCCCCTGCCACATTGAGTTCTCCCACTGAGCCCCAACTTCCTCCCAAAGAAAGAGAAAGACGGGTTCCTATGACAAGGCTTCGGAAACGGGTTGCTACACGGCTGAAAGATTCCCAGAACACTTTTGCTATGCTCACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTTCTGATTATAAGGATGCTTTTGTTGAGAAACACGGAGTCAAGTTGGGGCTTATGTCTGGCTTTGTCAAAGCTGCAGTGAATGCACTCCAACATCAACCAATTGTCAATGCTGTTATTGATGGGGATGATATTATATACAGAGATTATATAGATATCAGCATAGCTGTTGGTACCCCAAAGGGCCTTGTTGTTCCTGTTATCCGCAATGCGGATACCATGAACTTTGCCGATATAGAAAAGCAAATCAATGCTTTTGCTAAGAAGGCAAATGATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCCAACGGTGGTGTTTATGGAAGCCTTTTGAGTACCCCTATCATCAACCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGCCGTCCTACGGTTGTTGGAGGAAATATTGTCCCAAGACCATTGATGTACGTTGCTCTAACTTATGACCATAGAATTATTGATGGAAGAGAGGCAGTGTTCTTTCTGCGGCGCATCAAAGATATCGTGGAGGATCCTCGCAGGCTTTTGCTTGACATATAA 1398 0.4471 MFGVVRRRVASGSPSPWLLGQSVQKIRSGLSVSARVSSTVEKEIAIHSGGCGFVRNFCNITPGCGTNSKAMSVVFHPRSEAVRTWGRPFSSDSGDTVDVVVPPLAESISDGTLANFLKRPGDRVNADEPIAQIETDKVTIDVSSPESGVILKFLANEGDTVEPGNKIAIISRSADATHVAPSETTPEKGAPQPTQKVSEEKKAPKVETQPAKEKPKPPPATLSSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPTVVGGNIVPRPLMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0230 465 CDD lipoyl_domain 97 170 - -
Vra6g0230 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 121 150 IPR003016 -
Vra6g0230 465 MobiDBLite consensus disorder prediction 174 248 - -
Vra6g0230 465 Pfam Biotin-requiring enzyme 98 170 IPR000089 -
Vra6g0230 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 96 171 IPR000089 -
Vra6g0230 465 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 202 464 IPR006255 GO:0004149|GO:0006099|GO:0045252
Vra6g0230 465 Gene3D - 95 173 - -
Vra6g0230 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 235 463 IPR001078 GO:0016746
Vra6g0230 465 MobiDBLite consensus disorder prediction 194 212 - -
Vra6g0230 465 MobiDBLite consensus disorder prediction 230 248 - -
Vra6g0230 465 SUPERFAMILY CoA-dependent acyltransferases 235 464 - -
Vra6g0230 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 465 - -
Vra6g0230 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 465 - -
Vra6g0230 465 Gene3D - 221 461 IPR023213 -
Vra6g0230 465 SUPERFAMILY Single hybrid motif 96 186 IPR011053 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0230 Vra-Chr6 1714255 1720903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0230 64 463 Acyl Lipid Metabolism Gene Families AT1G54220 28.216 1.09e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0230 K00658 - gmx:100799149 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0230 6 1714255 1720903 Vra6g0230 6 1714255 1720903 ECH