Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0484 ATGGAGGCGCCGTCATTTGCTTATTCTGCTTCCTCTTCCTCTCTCCTTTCTCTTCGCAAAACGCCACTCTCATCTCCGAGATTACACCGTTTCGGCAATACCAAACATAAAAACTTCTCAATTCGTGCCTCCTCATCTGGGGATTCTGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGAAATCAAAGATGTGCAAACCCCGCAAGATATTTTGAATGCAAGACAGTTAGTTTTTCCAGGGGTTGGAGCATTTGCTGCTGCCATGGAGGTGTTAAGCAAAACTGGAATGGATGAAGCATTATGTTCATATATTGAAAAGGATCGTCCATTTTTGGGGATTTGTCTTGGACTTCAACTACTTTTTGAATCCAGTGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGAACTGTTGGGCGATTTGACTCATCAAATGGTTTTAGAGTACCACATATTGGCTGGAATGCTTTACAAATCACGAAGGACTCAGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTTCAGATGACAATAATGAGTGGATATCCTCCACATGTGACTATGGTGACAAATTTATAGCATCTATTAGAAGAGGAAATGTGCATGCAGTTCAATTCCACCCAGAGAAGAGTGGAGATGTTGGTCTCTCTATTTTGAGGAGATTCTTGAATCCAAAGTCAAACATGACAAAGAAGCCTGGTGAAGGAAAAGCTTTAAAACTTGCAAAAAGGGTGATTGCTTGTCTTGATGTGAGAGCAAACGATAATGGGGACCTTGTTGTAACCAAAGGAGATCAGTATGATGTAAGAGAACATACAAAAGAGAACGAGGTAAGGAATCTTGGCAAGCCTGTTGATCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACTGGATTTCGCGACTTCCCTCTTGGTGATTTACCCATGCTTCAGGTATTGCGATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGGGGAGGAATTAGAGATTTCACAGATTCAACTGGAAGGTACTATTCTAGTTTGGAAGTTGCTTCAGAATACTTTAGGTCTGGGGCTGATAAGATTTCTATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATATTTAAGAACCGGAGTAAAGACTGGGAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGCAGAGTGTATGTAAAGGATCCTAATGATGTGCAATTGAAGACCGTAAGGGTTTCAAATCCAGGTCCAAATGGAGAAGAGTATGCATGGTATCAATGTACAGTTAATGGAGGCCGAGAAGGCCGACAAATTGGTGCTTATGAACTAGCAAAAGCAGTTGAAGAGCTTGGTGCTGGAGAAATACTACTTAATTGCATCGATTGCGATGGTCAAGGGAAAGGATTTGATGTAGATTTAATTAAGTTGATATCAGACGCTGTAAGTATCCCTGTGATTGCAAGTAGTGGTGCTGGTGCTCCGGCACACTTTTCTGAAGTGTTCAATAAAACAAATGCATCAGCAGCACTTGCTGCTGGCATTTTTCACAGGAAGGAGGTGCCTATTCAGTCTGTAAAAGAGCATTTGTTGAAGGAAGGCATTGAAGTCCGAATCTGA 1740 0.4184 MEAPSFAYSASSSSLLSLRKTPLSSPRLHRFGNTKHKNFSIRASSSGDSVVTLLDYGAGNVRSVRNAIRFLGFEIKDVQTPQDILNARQLVFPGVGAFAAAMEVLSKTGMDEALCSYIEKDRPFLGICLGLQLLFESSEENGPVKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITKDSGILDDVGNHHVYFVHSYRAMPSDDNNEWISSTCDYGDKFIASIRRGNVHAVQFHPEKSGDVGLSILRRFLNPKSNMTKKPGEGKALKLAKRVIACLDVRANDNGDLVVTKGDQYDVREHTKENEVRNLGKPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSTGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVKDPNDVQLKTVRVSNPGPNGEEYAWYQCTVNGGREGRQIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVSIPVIASSGAGAPAHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0484 579 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 51 249 IPR010139 GO:0000105|GO:0016763
Pvu6g0484 579 CDD HisF 269 573 IPR004651 GO:0000105|GO:0000107
Pvu6g0484 579 Gene3D - 47 270 IPR029062 -
Pvu6g0484 579 SUPERFAMILY Class I glutamine amidotransferase-like 50 250 IPR029062 -
Pvu6g0484 579 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 50 258 - -
Pvu6g0484 579 Gene3D Aldolase class I 271 579 IPR013785 -
Pvu6g0484 579 SUPERFAMILY Ribulose-phoshate binding barrel 265 578 IPR011060 -
Pvu6g0484 579 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 267 578 IPR004651 GO:0000105|GO:0000107
Pvu6g0484 579 Pfam Histidine biosynthesis protein 270 561 IPR006062 GO:0000105
Pvu6g0484 579 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 62 579 - -
Pvu6g0484 579 Pfam Glutamine amidotransferase class-I 53 248 IPR017926 -
Pvu6g0484 579 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 62 579 - -
Pvu6g0484 579 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 50 251 IPR010139 GO:0000105|GO:0016763
Pvu6g0484 579 PIRSF IGPS_HisHF 48 579 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Pvu6g0484 579 CDD GATase1_IGP_Synthase 51 249 IPR010139 GO:0000105|GO:0016763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0484 K01663 - gmx:100500353 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0484 6 15992734 16000654 Pvu6g0484 6 15992734 16000654 ECH