Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00296 ATGCTTTTAAGCCAGTCAGCGCGGAAATTCCGCTCTGGCTCCTCAGCTCCTGCCAGAGTTTCCTCCATTGTTGAAAAGGAGGTTTCATTTCATTCAGGACATTATGGGAATGTCCGGAACTTCTCTCACATGACACCTGGCAAGTTTCGGGTGCTGGGTCAATGTAAAACCTATGAGGGAGGTTTTTTGTCAAGAGGCTACCATGCAAACATGGAGGCGTCCATTTTCATTGAATCTATTGCTGATGGAACCCTGGCAAAATTCTTGAAGAGGCCTGGTGACAGGGTTGCTGTTGATGAACCAATAGCTCAAATTGAAACAGATAAGGTGACAATTGACGTTTCTAGTCCGGAGTCAGGTGTGATTGTGAAGCTTCTAGCCAATGAAGGAGATACAGTTGAGCCAGGTAACAAGATAGCAATTATTTCAAGGTCTGCCGATGCTACTACTCATGTTGCTCCATCCGAGACTACATCTGAGAAAGCTGCTCCTCAGCCAACCCAAAAGACCAGTGAGGAGAAGAAAGCGCCTAAAGCTGAACCAGCACCTGCTAAAGAGAAACCCAAAGCACCCCCTGCTCCAGCGAGGCCTGCTGGTGCACAAAGTTCTCCTACTGAGCCACAGCTTCCCCCTAAGGAAAGGGAAAGACGAGTTCCTATGACAAGGCTTCGTAAACGTGTTGCTACCCGTTTGAAAGATTCCCAAAACACATTTGCCATGTTGACAACATTCAATGAAGTTGATATGACTAACTTGATGAAACTCCGTGCTGACTACAAGGATGCTTTTGTCGAAAAGCATGGAGTCAAGTTGGGACTTATGTCCGGGTTTGTCAAAGCTGCTGTCAATGCTCTCCAACATCAGCCAATTGTAAATGCAGTCATTGATGGGGATGATATCATATACAGAGATTACATAGATATCAGCATAGCTGTTGGTACACCAAAGGGTCTTGTTGTGCCAGTTATCCGCAATTGTGATACGATGAACTTTGCGGATATAGAGAAGCAGATCAATGCTTTTGCAAAGAAGGCAAATGATGGAACTCTATCAATTGATGAGATGGCTGGAGGCACACTCACAATATCTAATGGTGGTGTTTATGGAAGCCTCTTGAGTACCCCTATCATTAACCCTCCTCAGTCTGCAATCTTGGGCATGCATTCCATAGTGAGCCGTCCTATGGTGGTTGGAGGAAATGTTGTCCCAAGGCCTATGATGTACATTGCTCTAACATACGACCATAGAATTATTGATGGAAGAGAGGCAGTGTTCTTCTTGCGACGCATCAAGGATATCGTGGAGGATCCTCGCAGGCTTCTGCTCGACATATAA 1335 0.4554 MLLSQSARKFRSGSSAPARVSSIVEKEVSFHSGHYGNVRNFSHMTPGKFRVLGQCKTYEGGFLSRGYHANMEASIFIESIADGTLAKFLKRPGDRVAVDEPIAQIETDKVTIDVSSPESGVIVKLLANEGDTVEPGNKIAIISRSADATTHVAPSETTSEKAAPQPTQKTSEEKKAPKAEPAPAKEKPKAPPAPARPAGAQSSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNCDTMNFADIEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYIALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00296 444 CDD lipoyl_domain 78 142 - -
Aip07g00296 444 Gene3D - 199 440 IPR023213 -
Aip07g00296 444 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 214 442 IPR001078 GO:0016746
Aip07g00296 444 MobiDBLite consensus disorder prediction 167 185 - -
Aip07g00296 444 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 75 444 - -
Aip07g00296 444 ProSiteProfiles Biotinyl/lipoyl domain profile. 68 143 IPR000089 -
Aip07g00296 444 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 75 444 - -
Aip07g00296 444 SUPERFAMILY Single hybrid motif 77 159 IPR011053 -
Aip07g00296 444 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 187 443 IPR006255 GO:0004149|GO:0006099|GO:0045252
Aip07g00296 444 Gene3D - 73 145 - -
Aip07g00296 444 Pfam Biotin-requiring enzyme 76 142 IPR000089 -
Aip07g00296 444 MobiDBLite consensus disorder prediction 147 223 - -
Aip07g00296 444 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 93 122 IPR003016 -
Aip07g00296 444 MobiDBLite consensus disorder prediction 209 223 - -
Aip07g00296 444 SUPERFAMILY CoA-dependent acyltransferases 214 443 - -
Aip07g00296 444 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00296 Aip-Chr7 2704910 2709309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00296 79 442 Acyl Lipid Metabolism Gene Families AT1G54220 29.412 1.57e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00296 K00658 - gmx:100799149 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00296 07 2704910 2709309 Aip01g00682 01 10949723 10960728 ECH
Aip07g00296 07 2704910 2709309 Aip07g00296 07 2704910 2709309 ECH