Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0624 ATGCAAATGCAGAGCAGGCATTTTTCTTCAGACAATGGTGATTTGGTTGATGCTGTTGTCCCTTTTATGGGTGAATATATTAGCGACGGCATTCTGGCAAAATTCTTGAAGAATGCTGGTGACAGAGTGCAAGTTGATGAGCCTATTGCTCAAATTGAGATAGATAAGGTAACAATTGATGTTGCTAGTCTCAAGGCGGGTGTGATCCAGAAGTTTGTTGCAAAGGAAGGAGATGTTGTAGACCCAGGTACTAAGATTGCTGTCATTTCAAAATCTGGTGAGAGTGTAACCCATGTTGCTTCATCCAAGAAGAAATTGGACGAAGCTGCTCCCAAGCCACCTCCTGCTGCTGAAATTAAAAATGAGAATAAAAAATCCAAACCTGAAACAGCTCCTGTTATGGGGAAGCCGAAAGTACCCCCATCACCACCTCCTAAACAGTCTGCCTCAGAACCCGTGCTTCCTCCTAAGGAAAGGGAAAGACGCATAAGTCTTGTTCCCATGACAAGGCTTCGGAAACGGGTTGCAATGCATTTGAAAGATTCTCAAAACACTTTTGCTATGTTGAAAACATTCAATGAATTTGATATGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAGGCTGCTGTAAGTGGGCTTCAGAATCAGCCTATCATCAATGCGGTCATTGATGGGGATGATATCATATATAGAGATTATATAAATATCAGCATAGCTGTTGGAACTCCAAAGGGCCTCGTAGTTCCAGTTATTTGTGATGCTGGTAGGATGAATTTTGCTGAGATAGAGAAGGAGATCAATACACTGGCCAAGAAAGCAAATGATGGAACCATATCAATTGATGAGATGGCTGGAGGTTCATTCACAATATCCAATGGTGGTGTGTATGGAAGCCTTTTGAGTACTCCCATCATCAATCCCCCTCAGTCGGCAATCCTGGGTATGTACTCTATAGTGAAACGTCCCATGGTCGTTGGAGGCAACATAATTGCAACGTCAATGATGTACATTGCTTTGACATACGATCATTGGCTAATTGATGGAAGAGAGGCAGTGTTGTTCTTGCGCCACATCAAAGAAGTCATGGAGGACCCTTGCTGTCTGCTTCTTGACATATGA 1179 0.4198 MQMQSRHFSSDNGDLVDAVVPFMGEYISDGILAKFLKNAGDRVQVDEPIAQIEIDKVTIDVASLKAGVIQKFVAKEGDVVDPGTKIAVISKSGESVTHVASSKKKLDEAAPKPPPAAEIKNENKKSKPETAPVMGKPKVPPSPPPKQSASEPVLPPKERERRISLVPMTRLRKRVAMHLKDSQNTFAMLKTFNEFDMTNLMKLRSDYKDAFFEKHGVKLRFMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYINISIAVGTPKGLVVPVICDAGRMNFAEIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMYSIVKRPMVVGGNIIATSMMYIALTYDHWLIDGREAVLFLRHIKEVMEDPCCLLLDI* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0624 392 Gene3D - 147 387 IPR023213 -
Vvi19g0624 392 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 2 391 - -
Vvi19g0624 392 ProSiteProfiles Biotinyl/lipoyl domain profile. 15 90 IPR000089 -
Vvi19g0624 392 MobiDBLite consensus disorder prediction 134 151 - -
Vvi19g0624 392 MobiDBLite consensus disorder prediction 97 162 - -
Vvi19g0624 392 NCBIfam dihydrolipoyllysine-residue succinyltransferase 155 391 IPR006255 GO:0004149|GO:0006099|GO:0045252
Vvi19g0624 392 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 40 69 IPR003016 -
Vvi19g0624 392 Gene3D - 15 92 - -
Vvi19g0624 392 Pfam Biotin-requiring enzyme 20 89 IPR000089 -
Vvi19g0624 392 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 165 389 IPR001078 GO:0016746
Vvi19g0624 392 CDD lipoyl_domain 19 89 - -
Vvi19g0624 392 SUPERFAMILY CoA-dependent acyltransferases 164 391 - -
Vvi19g0624 392 SUPERFAMILY Single hybrid motif 16 103 IPR011053 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0624 Vvi-Chr19 6806690 6809957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0624 3 390 Acyl Lipid Metabolism Gene Families AT1G54220 28.731 4.35e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0624 K00658 - vvi:100257173 656.751