Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00324 ATGTTTGGTGTCATAAGGCGTAGGGTTGCTTCTGGCAACACATCTCCTTTGTTTCTAGGTCAGTCAGGGCAGAAAATTCGGGCTGGTCCTTCAGTTCCTGCTAGAGTTTCTTCCATTGTGGAAAAAGAGATTGCATTTCATTCAGGAGGATGTGGAAATGTCCGGAACTTCTGCCATATAGCACCTGGATACTGGATTAATTCAAAACCTATAAGGGACATTTTTCATCAAGAGGCTACCATGCAAACATGGAGGCGTTCATTTTCTTCTGAAAGTGGTGATTCGGTTGATGTTGTGGTCCCTCCATTGGCTGAATCCATCTCTGATGGAACTCTCGCGAAATTTCTGAAGAGGCCTGGTGACAAGGTTAATGTTGACGAACCAATTGCTCAAATTGAAACAGATAAGGTGACAATTGATGTTTCAAGTCCTGAATCAGGTGTGATTGTGAAGCTTCTAGTCAATGAAGGGGATACTGTTGAGCCAGGTAACAAAATAGCAATAATATCAAGGTCTGCTGATGCTACAACTCACGTTGCGCCATCTGAGACCACATCTGAGAAAGCTGCTCCTCAGCCAACCCAAAAGATTAGTGAGGCTGAGGAGAAGAAAGCACCTAAAGTTGAAACTGCTCCTCCTAAAGAGAAGCCTGCTCCTACTACAGAGAAGCCCAAAGCACCTCCTGCTCCACGGAGCTCTCCCTCTGAGCCACAGCTTCCCCCTAAGGAAAGAGAAAGACGAGTTCCTATGACTAGGCTTCGGAAACGGGTTGCTACACGGTTGAAAGATTCCCAAAACACATTTGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTTCGGGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCTGGGTTTATCAAAGCTGCTGTCAATGCACTTCAACATCAGCCAATTGTAAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTATATAGATATCAGCATAGCTGTTGGTACTCCAAAGGGACTTGTTGTGCCAGTTATCCGCAATGCTGATACCATGAATTTTGCGGATATAGAAAAGCAAATCAATGCTTTTGCAAAGAAGGCAAATAATGGAACTTTATCAATTGACGAGATGGCGGGAGGCACTCTTACAATATCAAATGGTGGTGTCTATGGGAGTCTTTTGAGTACTCCTATTATCAACCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGCCGTCCAATGGTTGTTGGTGGAAATGTTGTCCCAAGGCCAATGATGTACGTTGCTCTAACATATGACCATAGAATAATTGATGGAAGAGAGGCAGTGTTCTTTCTGAGACGCATCAAAGATATTGTGGAGGATCCTCGCAGGCTTCTGCTTGACATCTAA 1425 0.4351 MFGVIRRRVASGNTSPLFLGQSGQKIRAGPSVPARVSSIVEKEIAFHSGGCGNVRNFCHIAPGYWINSKPIRDIFHQEATMQTWRRSFSSESGDSVDVVVPPLAESISDGTLAKFLKRPGDKVNVDEPIAQIETDKVTIDVSSPESGVIVKLLVNEGDTVEPGNKIAIISRSADATTHVAPSETTSEKAAPQPTQKISEAEEKKAPKVETAPPKEKPAPTTEKPKAPPAPRSSPSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFIKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINAFAKKANNGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00324 474 Gene3D - 94 172 - -
Rops9g00324 474 MobiDBLite consensus disorder prediction 238 254 - -
Rops9g00324 474 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 237 472 - -
Rops9g00324 474 Pfam Biotin-requiring enzyme 97 169 IPR000089 -
Rops9g00324 474 CDD lipoyl_domain 96 169 - -
Rops9g00324 474 MobiDBLite consensus disorder prediction 172 254 - -
Rops9g00324 474 SUPERFAMILY CoA-dependent acyltransferases 244 473 - -
Rops9g00324 474 MobiDBLite consensus disorder prediction 222 237 - -
Rops9g00324 474 Gene3D - 230 470 IPR023213 -
Rops9g00324 474 MobiDBLite consensus disorder prediction 197 221 - -
Rops9g00324 474 ProSiteProfiles Biotinyl/lipoyl domain profile. 95 170 IPR000089 -
Rops9g00324 474 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 72 473 - -
Rops9g00324 474 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 120 149 IPR003016 -
Rops9g00324 474 MobiDBLite consensus disorder prediction 175 193 - -
Rops9g00324 474 SUPERFAMILY Single hybrid motif 96 186 IPR011053 -
Rops9g00324 474 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 244 472 IPR001078 GO:0016746
Rops9g00324 474 NCBIfam dihydrolipoyllysine-residue succinyltransferase 96 473 IPR006255 GO:0004149|GO:0006099|GO:0045252
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00324 Rops-Chr9 4029649 4036673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00324 72 472 Acyl Lipid Metabolism Gene Families AT1G54220 28.384 2.75e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00324 K00658 - gmx:100799149 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00324 9 4029649 4036673 Rops9g00324 9 4029649 4036673 ECH