Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00887 ATGTCACCCGATTTGGCTGGGGGAACAACCATTACATGTGGGAGGGCCTTGGCAGTTAATGGACTTGTCGAAGGTCAGAAGATTCGGTCTGGCCTCTCTGTTTCTCCCAGAGTTTCTCCCGCTTCTGTCGGCAAAGAGGATGCTGGAATAATTCTAAGGCTACTGGTGGTTTTTCATCCAGAGACAGCTGTTCGAACATGGGGGCGTCCATTTTCTTCAGACAGTGGAGATACGGTTGATGTCATGGTCCCTCCTCTGGCTGAATCTATCTCTGATGGAACCCTGGCAAACTTTTTGAAGAGGCCCGGTGACAGGGTTAATGCTGACGAGCCAATTGCTCAAATTGAAACAGATAAGGTCACAATCGATGTTTCAAGTCCTGAGGCAGGTGTGATTCTGAAGTTTCTAGCCAATGAAGGGGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGATCTGGTGACGCAACTCATGTTGCTCCATCTGATACTACATCTGAGAAAGCCGCTTCTCAGCCAACCCAAAAGGTTAGTGAGGAGAAGAAAGCTCCCAAAGTTGAAACTCAACCTGCTAAAGAGAAGCCCAAAACACCTCCGGCCACATTGAGTTCTCCCACTGAGCCCCAACTTCCTCCCAAAGAAAGAGAAAGACGGGTTCCTATGACAAGGCTGCGGAAACGAGTTGCTACACGACTGAAAGATTCCCAAAACACATTTGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGATCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCTGGCTTTGTTAAGGCGGCTGTCAATGCACTCCAACATCAACCAATTGTCAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTATATAGATATCAGCATAGCTGTTGGTACTCCGAAGGGCCTTGTTGTTCCGGTTATCCGCAATGCTGATACTATGAATTTTGCTGATATAGAAAAGCAAATCAATGCTTTTGCTAAGAAGGCAAATGATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCCAATGGTGGTGTTTATGGGAGCCTTTTGAGTACTCCTATTATCAATCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATCGTGAGTCGTCCGACGGTTGTGGGAGGAAATATTGTCCCAAGACCATTGATGTACGTTGCTCTGACATATGACCACAGAATTATTGATGGGAGAGAGGCAGTGTTCTTTCTGCGACGCATCAAAGATATTGTGGAGGATCCTCGCAGGCTTCTGCTTGACATATAA 1344 0.4509 MSPDLAGGTTITCGRALAVNGLVEGQKIRSGLSVSPRVSPASVGKEDAGIILRLLVVFHPETAVRTWGRPFSSDSGDTVDVMVPPLAESISDGTLANFLKRPGDRVNADEPIAQIETDKVTIDVSSPEAGVILKFLANEGDTVEPGNKIAIISRSGDATHVAPSDTTSEKAASQPTQKVSEEKKAPKVETQPAKEKPKTPPATLSSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPTVVGGNIVPRPLMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00887 447 ProSiteProfiles Biotinyl/lipoyl domain profile. 78 153 IPR000089 -
Spst8g00887 447 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 217 445 IPR001078 GO:0016746
Spst8g00887 447 SUPERFAMILY Single hybrid motif 78 169 IPR011053 -
Spst8g00887 447 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 103 132 IPR003016 -
Spst8g00887 447 MobiDBLite consensus disorder prediction 176 194 - -
Spst8g00887 447 CDD lipoyl_domain 79 152 - -
Spst8g00887 447 Gene3D - 203 443 IPR023213 -
Spst8g00887 447 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 210 445 - -
Spst8g00887 447 MobiDBLite consensus disorder prediction 212 226 - -
Spst8g00887 447 Pfam Biotin-requiring enzyme 80 152 IPR000089 -
Spst8g00887 447 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 58 446 - -
Spst8g00887 447 SUPERFAMILY CoA-dependent acyltransferases 217 446 - -
Spst8g00887 447 Gene3D - 77 155 - -
Spst8g00887 447 NCBIfam dihydrolipoyllysine-residue succinyltransferase 178 446 IPR006255 GO:0004149|GO:0006099|GO:0045252
Spst8g00887 447 MobiDBLite consensus disorder prediction 159 175 - -
Spst8g00887 447 MobiDBLite consensus disorder prediction 154 226 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00887 80 445 Acyl Lipid Metabolism Gene Families AT1G54220 28.837 7.78e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00887 K00658 - gmx:100799149 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00887 8 7843663 7851559 Spst8g00887 8 7843663 7851559 ECH