Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1541 . . . . Adu03g02865 Adu04g03385 Aed3g0012 . . . . . . . . . . . Apr4g2806 . Arst3g03786 Arst4g04423 . . . . Bva06g01700 Bva05g00081 . . Cca07g02556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g03531 . Lasa7g04653 Lasa3g00058 . . . . . . . . . Lja4g0473 . Mal7g4865 Mepo2g04549 Mepo3g00011 . . . . . Mtr8g3399 Phac2g04279 . Phco4g03227 Phco3g03289 . . . Psa7g0872 Pste3g01205 Pste5g00020 . Pte3g00137 . . Pumo6g00551 Pumo5g00369 Pvu2g2921 Pvu8g0011 Rops2g00634 Rops8g00015 Seca12g06414 Seca2g00037 Spst3g01168 . Ssu3g0009 . Sto3g2703 . . Tpr3g0705 Trre7g05346 Trre13g00017 . Tsu02g00528 Vian1g03776 Vian2g00012 Vifa2g03407 Vifa1g00029 Vimu11g04335 Vimu6g01399 Viun3g00660 Viun5g00015 Vivi5g05757 Vivi6g00121 Vra4g1405 .
Vvi1g1542 . . . . Adu09g03035 . . . . . . . . . . . . . . . Arst9g04071 . . . . . Bva06g01699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco6g03235 . . . . . . . . . . . Pumo3g00015 . Pvu7g0007 . Rops6g03638 . Seca8g08264 . Spst10g01744 . . . Sto3g2075 . . . . . . . Vian3g00006 . . . . . Viun7g04238 . . . . .
Vvi1g1543 . . . . . . . . . . . . . . . . . . Apr4g2807 . . . . . . . Bva06g01697 Bva05g00082 . . Cca07g02557 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g0476 . Mal7g4862 . . . . . . . Mtr8g3398 . . . . . . . Psa7g0879 . . . . . . . . . . . . . . . . Ssu3g0008 . Sto3g2088 . . Tpr3g0706 . . . Tsu02g00529 . . . . . . . . . . Vra4g1406 .
Vvi1g1544 . . . . . Adu04g03386 . . . . . . . . . . . . Apr4g2809 . . Arst4g04423 . . . . Bva06g01696 Bva05g00083 . . Cca07g02558 . . . . . . . . . . . Gma08g03318 . . . . . . . . . . . . . . . . . . . . Lasa3g00051 . . . . . . . . . . . . . . . . . . . . . . . Phco3g03292 . . . . . . . . . . . Pumo5g00366 . Pvu8g0009 . . . Seca2g00034 . . Ssu3g0007 . . . . . . . . . . . . Vifa1g00021 . . . . . Vivi6g00006 . .
Vvi1g1545 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1546 . . . . . . . . . . . . . . . . . . Apr4g2810 . . . . . . . Bva06g01695 Bva05g00084 . . Cca07g02559 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa3g00050 . . . . . . . . . . . . . . . . . . . . . . . Phco3g03293 . . . . . . . . Pte16g00118 . . . . Pvu8g0008 . Rops8g00010 . Seca2g00033 . . Ssu3g0006 . Sto3g2097 . . . . . . . . Vian2g00007 . . . Vimu6g01403 . Viun5g00011 . Vivi6g00005 Vra4g1408 .
Vvi1g1547 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1548 . . . . . . Aed3g0005 . . . . . . . . . . . Apr4g2811 . . . . . . . Bva06g01694 Bva05g00085 . . Cca07g02560 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g00978 . Lasa3g00049 . . . . . . . . . . Mal3g3037 . . . . . . . Mtr7g2240 . . Phac8g00009 Phco6g03237 Phco3g03295 . . . . Pste4g00018 Pste5g00010 . . . . Pumo3g00014 Pumo5g00365 Pvu7g0006 Pvu8g0007 Rops6g03639 Rops8g00009 Seca8g08265 Seca2g00031 Spst10g01746 . Ssu3g0005 . Sto3g2099 . Tpr6g0992 . . . Tsu07g02801 . Vian3g00005 Vian2g00006 . . . Vimu6g01405 Viun7g04239 Viun5g00009 . . Vra4g1409 .
Vvi1g1549 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g01693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa3g00048 . . . . . . . . . . . . . . . . . . . . . Phac8g00008 . Phco3g03296 . . . . . Pste5g00009 . . . Pte4g00540 . Pumo5g00364 . Pvu8g0006 . Rops8g00008 . Seca2g00030 . . . . . . . . . . . . . Vian2g00005 . . . . . Viun5g00007 . Vivi6g00004 . .
Vvi1g1550 . . . . . . Aed3g0004 . . . . . . . . . . . Apr4g2812 . . . . . . . . Bva05g00086 . . Cca07g02561 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g0004 . Sto3g2101 . . . . . . . . . . . . . . . . . Vra4g1410 .
   
Previous Page 155 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1541 Chr1 22072631 22073978 -
Adu Adu03g02865 Chr03 108835936 108837458 -
Adu Adu04g03385 Chr04 121913482 121915104 -
Aed Aed3g0012 Chr3 116796 118233 +
Apr Apr4g2806 Chr4 36588835 36591258 -
Arst Arst3g03786 Chr3 107561739 107563284 -
Arst Arst4g04423 Chr4 121882269 121883952 -
Bva Bva06g01700 Chr06 11902102 11903682 +
Bva Bva05g00081 Chr05 406124 408220 -
Cca Cca07g02556 Chr07 54588346 54590128 -
Lapu Lapu3g03531 Chr3 58707529 58710159 +
Lasa Lasa7g04653 Chr7 676561417 676563049 +
Lasa Lasa3g00058 Chr3 9635885 9637137 +
Lja Lja4g0473 Chr4 3871343 3873318 -
Mal Mal7g4865 Chr7 117176694 117179189 +
Mepo Mepo2g04549 Chr2 53946436 53948936 +
Mepo Mepo3g00011 Chr3 275456 277027 +
Mtr Mtr8g3399 Chr8 44513216 44515660 +
Phac Phac2g04279 Chr2 41261888 41264543 +
Phco Phco4g03227 Chr4 52942746 52944696 +
Phco Phco3g03289 Chr3 58554731 58556946 -
Psa Psa7g0872 Chr7 64195324 64197406 +
Pste Pste3g01205 Chr3 7675436 7678664 -
Pste Pste5g00020 Chr5 218308 224828 +
Pte Pte3g00137 Chr3 1376342 1378632 +
Pumo Pumo6g00551 Chr6 6931780 6934685 -
Pumo Pumo5g00369 Chr5 8576828 8578941 +
Pvu Pvu2g2921 Chr2 44753321 44755725 +
Pvu Pvu8g0011 Chr8 201637 204350 +
Rops Rops2g00634 Chr2 9062611 9069267 -
Rops Rops8g00015 Chr8 459738 461044 +
Seca Seca12g06414 Chr12 156157928 156159984 +
Seca Seca2g00037 Chr2 634840 636379 +
Spst Spst3g01168 Chr3 15224447 15226460 -
Ssu Ssu3g0009 Chr3 229053 231141 +
Sto Sto3g2703 Chr3 31684973 31686659 -
Tpr Tpr3g0705 Chr3 6798575 6801845 -
Trre Trre7g05346 Chr7 59630272 59632485 +
Trre Trre13g00017 Chr13 209995 212126 +
Tsu Tsu02g00528 Chr02 4462291 4465417 -
Vian Vian1g03776 Chr1 60717358 60719233 +
Vian Vian2g00012 Chr2 124402 127183 +
Vifa Vifa2g03407 Chr2 982467636 982469481 +
Vifa Vifa1g00029 Chr1 3708852 3710155 +
Vimu Vimu11g04335 Chr11 64675652 64677434 +
Vimu Vimu6g01399 Chr6 13524926 13533517 -
Viun Viun3g00660 Chr3 4037471 4039705 -
Viun Viun5g00015 Chr5 110651 112365 +
Vivi Vivi5g05757 Chr5 161308474 161310594 +
Vivi Vivi6g00121 Chr6 2837558 2839570 -
Vra Vra4g1405 Chr4 20731865 20734154 -
Vvi Vvi1g1542 Chr1 22080308 22083223 +
Adu Adu09g03035 Chr09 117950672 117951703 +
Arst Arst9g04071 Chr9 115834817 115836101 +
Bva Bva06g01699 Chr06 11898500 11900225 -
Phco Phco6g03235 Chr6 52791037 52792058 +
Pumo Pumo3g00015 Chr3 355261 356754 -
Pvu Pvu7g0007 Chr7 43820 45191 -
Rops Rops6g03638 Chr6 61495686 61497316 +
Seca Seca8g08264 Chr8 180362432 180363944 +
Spst Spst10g01744 Chr10 17846314 17847300 +
Sto Sto3g2075 Chr3 17414734 17416451 +
Vian Vian3g00006 Chr3 46218 47242 -
Viun Viun7g04238 Chr7 40781514 40782767 +
Vvi Vvi1g1543 Chr1 22097816 22098753 +
Apr Apr4g2807 Chr4 36595722 36624920 +
Bva Bva06g01697 Chr06 11890057 11891585 -
Bva Bva05g00082 Chr05 414594 416081 +
Cca Cca07g02557 Chr07 54645386 54646723 +
Lja Lja4g0476 Chr4 3900860 3902745 +
Mal Mal7g4862 Chr7 117148443 117149692 -
Mtr Mtr8g3398 Chr8 44493630 44495075 -
Psa Psa7g0879 Chr7 66029800 66031305 -
Ssu Ssu3g0008 Chr3 177914 178913 -
Sto Sto3g2088 Chr3 17527734 17528853 -
Tpr Tpr3g0706 Chr3 6815542 6817264 +
Tsu Tsu02g00529 Chr02 4483614 4485316 +
Vra Vra4g1406 Chr4 20749586 20750995 +
Vvi Vvi1g1544 Chr1 22102872 22108036 -
Adu Adu04g03386 Chr04 121983266 121984826 -
Apr Apr4g2809 Chr4 36629926 36630939 -
Arst Arst4g04423 Chr4 121882269 121883952 -
Bva Bva06g01696 Chr06 11884774 11886260 +
Bva Bva05g00083 Chr05 417753 419807 -
Cca Cca07g02558 Chr07 54651828 54655803 -
Gma Gma08g03318 Chr08 49956233 49957057 +
Lasa Lasa3g00051 Chr3 9272859 9273481 +
Phco Phco3g03292 Chr3 58575103 58575422 -
Pumo Pumo5g00366 Chr5 8541975 8542278 +
Pvu Pvu8g0009 Chr8 179918 180631 +
Seca Seca2g00034 Chr2 592885 598614 +
Ssu Ssu3g0007 Chr3 169001 169545 +
Vifa Vifa1g00021 Chr1 2710291 2711952 +
Vivi Vivi6g00006 Chr6 306071 307613 +
Vvi Vvi1g1545 Chr1 22117367 22118070 +
Vvi Vvi1g1546 Chr1 22123684 22131169 +
Apr Apr4g2810 Chr4 36645072 36650936 +
Bva Bva06g01695 Chr06 11876788 11881991 -
Bva Bva05g00084 Chr05 421066 425812 +
Cca Cca07g02559 Chr07 54674034 54682673 +
Lasa Lasa3g00050 Chr3 9251892 9256558 -
Phco Phco3g03293 Chr3 58576432 58582079 +
Pte Pte16g00118 Chr16 1302568 1303280 -
Pvu Pvu8g0008 Chr8 173472 178705 -
Rops Rops8g00010 Chr8 323247 329726 -
Seca Seca2g00033 Chr2 588840 590687 -
Ssu Ssu3g0006 Chr3 151904 156785 -
Sto Sto3g2097 Chr3 17668531 17673674 +
Vian Vian2g00007 Chr2 79242 84439 -
Vimu Vimu6g01403 Chr6 13562056 13567539 +
Viun Viun5g00011 Chr5 76008 81463 -
Vivi Vivi6g00005 Chr6 299410 303940 -
Vra Vra4g1408 Chr4 20769862 20775363 +
Vvi Vvi1g1547 Chr1 22164975 22165280 -
Vvi Vvi1g1548 Chr1 22185936 22196036 +
Aed Aed3g0005 Chr3 51715 58552 -
Apr Apr4g2811 Chr4 36656037 36661419 +
Bva Bva06g01694 Chr06 11871236 11876259 -
Bva Bva05g00085 Chr05 428107 434107 +
Cca Cca07g02560 Chr07 54706385 54711349 +
Lapu Lapu1g00978 Chr1 23030662 23036932 -
Lasa Lasa3g00049 Chr3 9232923 9236914 -
Mal Mal3g3037 Chr3 105311500 105319167 -
Mtr Mtr7g2240 Chr7 38759538 38767550 -
Phac Phac8g00009 Chr8 184052 187463 -
Phco Phco6g03237 Chr6 52793909 52797821 +
Phco Phco3g03295 Chr3 58586869 58590259 +
Pste Pste4g00018 Chr4 129012 135655 -
Pste Pste5g00010 Chr5 103366 108435 -
Pumo Pumo3g00014 Chr3 331547 336842 -
Pumo Pumo5g00365 Chr5 8509507 8514718 -
Pvu Pvu7g0006 Chr7 36343 41661 -
Pvu Pvu8g0007 Chr8 163371 169459 -
Rops Rops6g03639 Chr6 61508891 61513520 +
Rops Rops8g00009 Chr8 304525 309716 -
Seca Seca8g08265 Chr8 180366430 180370319 +
Seca Seca2g00031 Chr2 576535 581392 -
Spst Spst10g01746 Chr10 17851532 17855366 +
Ssu Ssu3g0005 Chr3 133276 136770 -
Sto Sto3g2099 Chr3 17693450 17699777 +
Tpr Tpr6g0992 Chr6 9020638 9028977 -
Tsu Tsu07g02801 Chr07 32844541 32852035 -
Vian Vian3g00005 Chr3 36946 40581 -
Vian Vian2g00006 Chr2 73116 76496 -
Vimu Vimu6g01405 Chr6 13569992 13573425 +
Viun Viun7g04239 Chr7 40787660 40793245 +
Viun Viun5g00009 Chr5 69363 74408 -
Vra Vra4g1409 Chr4 20777091 20782175 +
Vvi Vvi1g1549 Chr1 22200872 22202301 -
Bva Bva06g01693 Chr06 11869164 11870570 +
Lasa Lasa3g00048 Chr3 9230211 9231358 +
Phac Phac8g00008 Chr8 180142 181788 +
Phco Phco3g03296 Chr3 58592501 58594142 -
Pste Pste5g00009 Chr5 101101 102970 +
Pte Pte4g00540 Chr4 35392768 35394214 +
Pumo Pumo5g00364 Chr5 8507045 8509151 +
Pvu Pvu8g0006 Chr8 161776 164047 +
Rops Rops8g00008 Chr8 301087 303351 +
Seca Seca2g00030 Chr2 573353 576212 +
Vian Vian2g00005 Chr2 69240 70914 +
Viun Viun5g00007 Chr5 66785 68933 +
Vivi Vivi6g00004 Chr6 289621 291230 +
Vvi Vvi1g1550 Chr1 22210550 22211854 -
Aed Aed3g0004 Chr3 51221 55260 +
Apr Apr4g2812 Chr4 36661753 36663924 -
Bva Bva05g00086 Chr05 434292 435095 -
Cca Cca07g02561 Chr07 54712129 54713491 -
Ssu Ssu3g0004 Chr3 128595 130520 +
Sto Sto3g2101 Chr3 17722552 17724663 -
Vra Vra4g1410 Chr4 20782682 20784609 -
Lja Lja4g0476 Chr4 3900860 3902745 +
Mal Mal7g4862 Chr7 117148443 117149692 -
Mtr Mtr8g3398 Chr8 44493630 44495075 -
Psa Psa7g0879 Chr7 66029800 66031305 -
Tpr Tpr3g0706 Chr3 6815542 6817264 +
Tsu Tsu02g00529 Chr02 4483614 4485316 +
Lja Lja4g0473 Chr4 3871343 3873318 -
Mal Mal7g4865 Chr7 117176694 117179189 +
Mtr Mtr8g3399 Chr8 44513216 44515660 +
Tpr Tpr3g0705 Chr3 6798575 6801845 -
Tsu Tsu02g00528 Chr02 4462291 4465417 -
Psa Psa7g0872 Chr7 64195324 64197406 +