Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03293 ATGCCTAGCCAACGATTATGTATTTATATCTATGTTGCTACAGCTACAGATCAAAGAAGCAAGATGTGGGGTGTAATAAGGCAAAAGACTCAGAGCATTCGCCCGGCCTTCTCCGCTATCAGACATTTTTCTTCTGCGGCCAAAGAGATCACTGTTCGAGAGGCTCTCAACACCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGAGAAGTATGGCCCTGATAGGGTTCTCGATACCCCAATCACTGAGGCTGGGTTTGCTGGTATTGGAGTTGGTGCTGCTTACTATGGTCTAAGACCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGACCATATTATTAATTCTGCCGCAAAATCCAATTACATGTCTTCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCCGCTGGGGTTGGTGCCCAGCATTCTCAATGTTATGCATCTTGGTATGCTTCATGCCCTGGGTTGAAAGTCCTGACACCATATTCATCTGAAGATGCGCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAGTTGCTATATGGTGAGTCATTCCCTGTTTCGGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTGACTATTACAGCTTATTCAAAAATGGTTGGCTTTGCTCTCAAGGCTGCCGAGACACTGGCTAAAGAAGGAATCAGTGCTGAGGTTATTAATTTGCGTTCAATCCGACCGCTGGATCGCTCAACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGGGCTGAAATCTGCACATCTGTCATTGAGGAGAGTTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCTATGCCATACGCAGCTAATCTGGAGAGAATGGCTGTCCCACAGATTGAAGATATTGTTCGAGCTGCGAAGAGAGCATGCCACAGATCGGTGCCGTTGGCTGCAGCTGCTTGA 1152 0.4609 MPSQRLCIYIYVATATDQRSKMWGVIRQKTQSIRPAFSAIRHFSSAAKEITVREALNTALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPDRVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYASWYASCPGLKVLTPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAYSKMVGFALKAAETLAKEGISAEVINLRSIRPLDRSTINTSVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQIEDIVRAAKRACHRSVPLAAAA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03293 383 FunFam Pyruvate dehydrogenase E1 component subunit beta 49 241 - -
Phco3g03293 383 Pfam Transketolase, pyrimidine binding domain 49 224 IPR005475 -
Phco3g03293 383 Gene3D - 242 374 IPR009014 GO:0003824
Phco3g03293 383 Gene3D - 49 241 - -
Phco3g03293 383 FunFam Pyruvate dehydrogenase E1 beta subunit 242 374 - -
Phco3g03293 383 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 48 253 IPR029061 -
Phco3g03293 383 Pfam Transketolase, C-terminal domain 243 365 IPR033248 -
Phco3g03293 383 CDD TPP_PYR_E1-PDHc-beta_like 54 220 - -
Phco3g03293 383 PANTHER DEHYDROGENASE RELATED 38 374 IPR027110 GO:0004739|GO:0006086
Phco3g03293 383 SMART Transket_pyr_3 50 225 IPR005475 -
Phco3g03293 383 SUPERFAMILY TK C-terminal domain-like 238 373 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03293 Phco-Chr3 58576432 58582079 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g03293 3 58576432 58582079 Phco3g03293 3 58576432 58582079 ECH