Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0009 ATGGCAATCAGCCACAATACTTTGGCATTTACCTTTGGCATGCTAGGTAACGTCATTTCGTTCTTGGTATTCTTGGCTCCAATACCAACATTTTACCGAATATACAAGAAGAAATCGACTGAGGGTTTTCAGTCCCTGCCTTACGTGGTGGCATTGTTCAGTTCCATGCTTTGGTTGTGCTATGCTTTACTAAAAAAAGACGCTGTTCTTCTCTTGACCATTAACTCATTTGGATGTGTCATAGAGATCATCTACATCATCTTGTACATCACTTATGCTTCCAGGGATGTTAGGAACTTAACTTTAAAGCTATTTTTGGCAATGAATGTGGGCTCCTTTGCTCTGATCCTTTTGGTCACACATTTTGCTGTGCACGGTTCCCTTCGTGTCCAAGTCCTTGGATGGATATGTGTTTCCCTTTCGATTAGTGTCTTTGCGGCACCACTAAGCATTGTGGCACAAGTTGTTCGGACAAAGAGTGTAGAGTTTATGCCTTTCAATTTGTCATTTACCCTCACATTGAGTGCCATAATGTGGTTTGGTTATGGCCTCTTTCTCAAGGACATATGCATTGCTCTCCCAAATGTTCTTGGCTTTGCACTGGGGCTACTTCAGATGCTGCTCTATGCCATTTACCGGAAGGGCAATAAGAAGGTTGATAAAACGGAAAAGAAGCTGCCGCTAGAGCCACTAAAAAGCGTTGTTATAGCTAGCCCCTTGGAAAATGGTGAGGTGTTTCCCGTGGAGGAAAAgaagcaagaaaagaaaagcaaagaaCATGGAGAGGAGAAGGAAAAAAGTAATGAACCTAACGATTCCGCAGTCTAA 828 0.4155 MAISHNTLAFTFGMLGNVISFLVFLAPIPTFYRIYKKKSTEGFQSLPYVVALFSSMLWLCYALLKKDAVLLLTINSFGCVIEIIYIILYITYASRDVRNLTLKLFLAMNVGSFALILLVTHFAVHGSLRVQVLGWICVSLSISVFAAPLSIVAQVVRTKSVEFMPFNLSFTLTLSAIMWFGYGLFLKDICIALPNVLGFALGLLQMLLYAIYRKGNKKVDKTEKKLPLEPLKSVVIASPLENGEVFPVEEKKQEKKSKEHGEEKEKSNEPNDSAV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0009 275 PANTHER RAG1-ACTIVATING PROTEIN 1 15 266 - -
Ssu3g0009 275 Gene3D - 11 98 - -
Ssu3g0009 275 Pfam Sugar efflux transporter for intercellular exchange 11 95 IPR004316 GO:0016021
Ssu3g0009 275 Pfam Sugar efflux transporter for intercellular exchange 131 214 IPR004316 GO:0016021
Ssu3g0009 275 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 15 266 - -
Ssu3g0009 275 MobiDBLite consensus disorder prediction 245 275 - -
Ssu3g0009 275 Gene3D - 129 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0009 Ssu-Chr3 229053 231141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0009 3 275 Miscellaneous Gene Families AT5G13170 61.091 1.52e-117 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0009 K15382 - gmx:100800528 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0009 3 229053 231141 Ssu3g0009 3 229053 231141 ECH