Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00010 ATGCTTGTTGGCTTGGTTCATTGTGCATCGTTGAGTGAGTGGGGATCGGAATCGGAATCCAGGTGTAGGGTTTTTGTGAGTAGCTTTGCTTCATTCAAGTTCAAGGAAACCAAGATGTGGGGTGTTATAAGGCACAAGAGTATCCGCCCTGCCTTCTCCGTATTCAGACATTTCTCTGCTGCCGCTAAAGAGATTACAGTGAGAGAGGCTCTGAACTCCGCACTTGATGAGGAAATGTCAGCTGATCCTAAAGTTTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTAGAGAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGGCTGGGTTTACTGGGATTGGAGTTGGCGCTGCGTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACATTTAACTTCTCCATGCAGGCAATAGATCACATTATTAATTCTGCTGCAAAATCAAACTACATGTCTGCTGGACAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAGCACTCTCAATGTTATGCATCTTGGTATGCCTCTTGCCCTGGGTTGAAAGTGTTGACGCCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAGTTGTTATATGGTGAGTCTTTCCCTGTTTCGGCCGAAGCTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGAGAAGGAAAAGATGTGACTATTACAGCCTTTTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGATACTGGCAAAGGAAGGAATCAGTGCTGAGGTTATTAACTTGCGTTCAATCCGGCCGCTTGATCGATCTACAATCAATGCTTCTGTCAGGAAAACCAACAGACTGGTGACACTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGTGCTGAAATCTGCACATCTGTCATTGAGGAGAGTTTTGGTTATCTTGACGCACCAGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCTACAGATCTGTGCCTTTGGCTGCAGCTGCTTAA 1197 0.4595 MLVGLVHCASLSEWGSESESRCRVFVSSFASFKFKETKMWGVIRHKSIRPAFSVFRHFSAAAKEITVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYASCPGLKVLTPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEALDSSFCLPIGKAKIEREGKDVTITAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTLEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00010 398 Gene3D - 64 256 - -
Rops8g00010 398 SMART Transket_pyr_3 65 240 IPR005475 -
Rops8g00010 398 Gene3D - 257 389 IPR009014 GO:0003824
Rops8g00010 398 CDD TPP_PYR_E1-PDHc-beta_like 69 235 - -
Rops8g00010 398 Pfam Transketolase, C-terminal domain 258 380 IPR033248 -
Rops8g00010 398 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 64 244 IPR029061 -
Rops8g00010 398 SUPERFAMILY TK C-terminal domain-like 255 387 IPR009014 GO:0003824
Rops8g00010 398 FunFam Pyruvate dehydrogenase E1 beta subunit 257 389 - -
Rops8g00010 398 Pfam Transketolase, pyrimidine binding domain 64 239 IPR005475 -
Rops8g00010 398 FunFam Pyruvate dehydrogenase E1 component subunit beta 64 256 - -
Rops8g00010 398 PANTHER DEHYDROGENASE RELATED 59 390 IPR027110 GO:0004739|GO:0006086
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00010 Rops-Chr8 323247 329726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00010 59 388 Acyl Lipid Metabolism Gene Families AT1G30120 41.566 4.96e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00010 K00162 - gmx:100805001 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00010 8 323247 329726 Rops8g00010 8 323247 329726 ECH