Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0005 ATGAAGAGCTCTCTGAAAAAATTGCGAGGTCTGGCACTTCacaatcacaatcacaatcacAAGCATGCGTCCTCCAAGTCCATTCAGCCTCTGGGCCAGCTTGACGAGCTGGCTCGGGCTACCCAGGACATGCAAGACATGAGGGACTGCTATGACACCTTGCTTTCTGCCGCAGCAGCAACCGCCAGCAGTGCTTATGAATTCTCCGAGTCCTTGCGGGACATGGGCTCTTGTCTTCTTGAGAAGACCGCTTTAAATGATCAGGGAGATGAAACTGGAAAACTTCTCCTCATGCTTGGCAAAATCCAGTTCAAACTCCAGAAACTCATTGATGGCTATGTCACTCCTAATTCCTACTctctttcattttatctttcctttttatttttagtgctTTTCATCACCTTTTCTTTCCCATTTCAGCGTTCTCATATATTCCAGACAATTACCATTCCCTCAGAGTCTCTCTTGAATGAACTTCGAATTGTTGAgGAGATGAAGCGACAATGTGATGAGAAAAGAGATGTATATGAGTATATGGTAACAAGATATAGAGAAGGAGGCAGGTCTAAAGGTGGGAAAGGGGAAACTTTTTCTTTGCAGCAGTTGCAAACTGCTCATGATGAATATGATGAAGAGGCTACTTTGTTTGTTTTCCGATTGAAATCTCTGAAGCAAGGGCAATCGCGTAGTCTTCTAACACAGGCAGCACGTCACCACGCTGCTCAGTTATGCTTCTTCAATAAAGCAGTCAAGTCCCTTGAGACAGTAGAACCACATGTAAAATCAGTAACTGAACAGCAACACATTGATTACCACTTCAGTGGTCTTGAAGAGGAGGATGGGGATGAAGGTGATTATGGAGATGATGATGGAGGTGGTTATGATGAGAATGATGATGGGGAGCTGAGTTTTGACTATGGACAAATTGAACAAGACCGAGATGTTTCTACATCACAAAACTCAATGGAGCTGGACCAGGTGGAACTTACACTTCCTAGAGGTTCTACAGCTGAAGCTGCTAAGgaaaatttagataaacttcaaaggaatttgttttcctttaggGTTAGGACAGGGAGCCAATCCGCCCCACTTTTTGCTGATAATAAACCTGATTCAACTGAAAAACTGAGACAGATGCGCCCATCTTTATCACGGAAGTTCAGTTCATATGTGCTACCCACACCAGTTGATGCTAAGAGTTCAACCTCTTCAGGGTCAAATAATCCAAAGTCTTCCAAAATGCAGACAAATTTAATTGAACCTACAAAGAACTTGTGGCATTCATCCCCATTGGAACAAAAGAAACATGAAAAAGATACTGGAGATGAGTTTTCTGGTTCTATTGTCAGAAGTGCACAGTCAGTACTCAAGGAAAGTAACAGCAATACTGCTTCCATGAGACTGCCGCCTCCTTTAGTAGATAGTCTTTTATCCTCGAATCGTGATTACATTTCTTCTTActctaaaaagattaaaagacaTGCCTTTTCTGGCCCATTGACAACTAATCCTGGGCCTACCAAGACAGTCTCGGTAGAAAGTGTTCAACTGTTCTCTGGACCTCTTTTGCCAACTCCAATCCCTCAGCCTCCATCATCATCTCCAAAAGTATCTCCTAGTGCTTCTCCTACTATTATCTCTTCACCCAAAATAAGTGAGCTTCATGAACTTCCAAGGCCTCCAACCAGTTTCCCGTCCAATTCAAGGATTTTAGGTTTGGTGGGTCATTCTGGTCCATTGGTGTCTAGAGGTCAAAAGGTTTCCACTGCAAATAATTTGGTTGCATCAAGTGCAGCATCTCCACTGCCAATGCCACCTCAGGCCATGGCTCGTAGTTTCTCCATACCTTCTAGTGGCACTAGAGGTGCAGCATTACATGGGTCAAGAGCGCTAGAATCCTCTCATAGATCATCTATATCTGAGAATATTGCTTCTCCTCCTCTGATGCCAATAGCATTATCTAGTAGTCGGCCATCATCAGATGGCTGA 1995 0.415 MKSSLKKLRGLALHNHNHNHKHASSKSIQPLGQLDELARATQDMQDMRDCYDTLLSAAAATASSAYEFSESLRDMGSCLLEKTALNDQGDETGKLLLMLGKIQFKLQKLIDGYVTPNSYSLSFYLSFLFLVLFITFSFPFQRSHIFQTITIPSESLLNELRIVEEMKRQCDEKRDVYEYMVTRYREGGRSKGGKGETFSLQQLQTAHDEYDEEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLCFFNKAVKSLETVEPHVKSVTEQQHIDYHFSGLEEEDGDEGDYGDDDGGGYDENDDGELSFDYGQIEQDRDVSTSQNSMELDQVELTLPRGSTAEAAKENLDKLQRNLFSFRVRTGSQSAPLFADNKPDSTEKLRQMRPSLSRKFSSYVLPTPVDAKSSTSSGSNNPKSSKMQTNLIEPTKNLWHSSPLEQKKHEKDTGDEFSGSIVRSAQSVLKESNSNTASMRLPPPLVDSLLSSNRDYISSYSKKIKRHAFSGPLTTNPGPTKTVSVESVQLFSGPLLPTPIPQPPSSSPKVSPSASPTIISSPKISELHELPRPPTSFPSNSRILGLVGHSGPLVSRGQKVSTANNLVASSAASPLPMPPQAMARSFSIPSSGTRGAALHGSRALESSHRSSISENIASPPLMPIALSSSRPSSDG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0005 664 CDD BAR 66 260 - -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 599 664 - -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 277 303 - -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 448 470 - -
Ssu3g0005 664 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 142 663 IPR037488 -
Ssu3g0005 664 PANTHER BNAA05G10100D PROTEIN 142 663 - -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 431 446 - -
Ssu3g0005 664 Coils Coil 338 358 - -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 523 565 - -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 363 477 - -
Ssu3g0005 664 SUPERFAMILY BAR/IMD domain-like 142 263 IPR027267 -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 525 539 - -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 275 303 - -
Ssu3g0005 664 PANTHER BNAA05G10100D PROTEIN 1 113 - -
Ssu3g0005 664 SUPERFAMILY BAR/IMD domain-like 36 115 IPR027267 -
Ssu3g0005 664 MobiDBLite consensus disorder prediction 384 430 - -
Ssu3g0005 664 Gene3D Arfaptin homology (AH) domain/BAR domain 33 280 IPR027267 -
Ssu3g0005 664 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 113 IPR037488 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0005 Ssu-Chr3 133276 136770 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0005 - - gmx:100778278 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0005 3 133276 136770 Ssu3g0005 3 133276 136770 ECH