Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1542 ATGGAAAACTACAAAACCCTAGAAATTGTTCAGAGAAGCCCTAAATCTTCAGTTTTCCACCTCAATCTCAACCGTCCTTCTCTCCGAAATGCTCTCTCCCTCGACTTCTTCTCAGAGTTTCCCAAAGCCCTCGATTCCCTCGACCAAAACCCTAACGTAAGCGTCATTATTCTCTCCGGAAACGGAGCCCATTTCTGCTCCGGCATCGACCTAAAAGTCTTGGACTCCATCTCCGAACGTTCCCAATCCAGTGACCGCGGCCGCACCGGGGAGAGGCTCCGACGGCATATTAAGTTCTTGCAGGATGCCATCACGGCCATCGAGCACTGCCGGAAGCCGGTGATCGCCGGGATCCACGGAGCGTGCATCGGCGCTGGGATTGATGTTGTGACGGCTTGTGACATCAGGTTTTGTACGGAGGACGCATTCTTCTCCGTGAAAGAGGTGGATCTGGCGATCACTGCCGATGTCGGTACGCTTCAGCGGCTCCCGAGCATCGTTGGGTACGGTAACGCGGTCGAATTGGCGCTGACTGGAAGGCGATTTTCGGGCTCTGAGGCGAAATCGTTGGGTCTGGTTTCTACGGTTTTTGCCTCCAAGGAAGCCATGGATGAAGGCATAAGACTAGTTGCAGAAGCCAAGTCTCCTCTTGCTGTCACCGGGACAAAAGCAGTGTTACTAAGAGGTCGAGATCTCACTGTGGATCAAGGATTAGATTATGTTGCAACTTGGAACTCCGGCATGCTTTTATCTGGTGATTTAGCCGAAGCCGTCTCAGCTCAAATCCAGAAGAGGAAGCCTGTTTTTGCCAAGCTCTGA 819 0.5238 MENYKTLEIVQRSPKSSVFHLNLNRPSLRNALSLDFFSEFPKALDSLDQNPNVSVIILSGNGAHFCSGIDLKVLDSISERSQSSDRGRTGERLRRHIKFLQDAITAIEHCRKPVIAGIHGACIGAGIDVVTACDIRFCTEDAFFSVKEVDLAITADVGTLQRLPSIVGYGNAVELALTGRRFSGSEAKSLGLVSTVFASKEAMDEGIRLVAEAKSPLAVTGTKAVLLRGRDLTVDQGLDYVATWNSGMLLSGDLAEAVSAQIQKRKPVFAKL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1542 272 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 115 135 IPR018376 GO:0003824
Vvi1g1542 272 SUPERFAMILY ClpP/crotonase 6 270 IPR029045 -
Vvi1g1542 272 Pfam Enoyl-CoA hydratase/isomerase 15 270 IPR001753 -
Vvi1g1542 272 PANTHER ENOYL-COA HYDRATASE 2 272 IPR045002 GO:0016853
Vvi1g1542 272 FunFam Delta3,5-delta2,4-dienoyl-CoA isomerase 213 272 - -
Vvi1g1542 272 CDD crotonase-like 18 212 - -
Vvi1g1542 272 FunFam Delta3,5-delta2,4-dienoyl-CoA isomerase 1 215 - -
Vvi1g1542 272 Gene3D - 213 272 IPR014748 -
Vvi1g1542 272 Gene3D - 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1542 Vvi-Chr1 22080308 22083223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1542 1 212 Acyl Lipid Metabolism Gene Families AT5G43280 73.709 1.16e-108 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1542 K12663 - vvi:100249010 515.383