Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1550 ATGGGGTCTCCATCTCTGCTCTTCCTTTTTCTTGCTGTCTTAGCTTTTGTGACTGTGGATTGCAGCTATGAAGGCGATGTCCTTTATGCATGGAAGATCAAACTCGAGGACCCTAACAACGTCCTCAAGAGTTGGGATTCATCATTAGCAAATCCATGTACTTGGTCTCATGTCACTTGCAACTCCAACAACAATGTCACAAGGGTGGACCTTGGCAATGCAGGACTCTCAGGACCTCTTATCCCTGACCTTGGAAACTTGACCTTTCTTCAATACTTCGAGGTGTTTGAAAACAAGATCAATGGTTCCATTCCAAGTGAGATAGGGAAATTATTAAAGCTGGTCAGCTTAGACCTAAAATATAATCATCTTTCAGGGTTCATTCCTGAGTCTCTTGGCAACCTCACATCCTTGAGGTTTATGAGATTGAATCATAATAATCTAACAGGGACTGTACCAAAAGAGATCTTTCAGCTAATTGGCTCCGGCAACTTGTGGACACTGGACCTATCGGATAACGACTTAAATGGGACCGTTCGAGCAACTAATCCAATAGGTAACTAA 564 0.4273 MGSPSLLFLFLAVLAFVTVDCSYEGDVLYAWKIKLEDPNNVLKSWDSSLANPCTWSHVTCNSNNNVTRVDLGNAGLSGPLIPDLGNLTFLQYFEVFENKINGSIPSEIGKLLKLVSLDLKYNHLSGFIPESLGNLTSLRFMRLNHNNLTGTVPKEIFQLIGSGNLWTLDLSDNDLNGTVRATNPIGN* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1550 187 SUPERFAMILY L domain-like 25 178 - -
Vvi1g1550 187 Pfam Leucine rich repeat 108 148 IPR001611 GO:0005515
Vvi1g1550 187 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 181 - -
Vvi1g1550 187 FunFam Somatic embryogenesis receptor kinase 1 20 186 - -
Vvi1g1550 187 Gene3D Ribonuclease Inhibitor 21 186 IPR032675 -
Vvi1g1550 187 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1550 Vvi-Chr1 22210550 22211854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1550 1 179 Receptor kinase-like Gene Family AT1G71830 51.630 1.23e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1550 - - vvi:100264403 373.629