Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00029 ATGGCAATAAGTCACTCCACTTTAGCATTTGCCTTTGGCATGCTAGGTAATGTCATTTCCTTCATGGTATTCTTGGCTCCAATTACAACATTTTATCGCATATATAAGAAGAAATCAACTGAGGGTTTCCAATCACTACCTTATCTGGTGGCATTATTCAGTTCCATGCTTTGGTTATACTATGCATTACTCAAAAAACATGAATTTCTCCTAATTACCATTAACTCCTTCGGATGCGTAGTAGAACTCATGTACATAATCTTGTACATCATTTATGCAACCAAGGATGCAAGGAAATTAAGTATTAAGTTAGTTTTGGCGATGAACATTGGATCGTTTGGTTTGATCCTTTTGGTGACACAGTACGCTTTGCATGGTCCGATTCGTGTTGAAGTTCTTGGATGGGTTTGTGTTTCTATATCAGTTAGTGTGTTTGCAGCACCATTAACCATTGTGGCACAAGTTATTAGAACAAAGAGTGTTGAGTTTATGCCGTTCAATTTATCGTTTACTCTCACACTGAGTGCAATTATGTGGTTTGGTTATGGTCTTTTTCTCAAAGACATATGCATTGCTCTACCAAATGTGCTTGGATTTGTACTAGGGTTGGTTCAGATGATACTCTATGGTATTTATAGGAATGGTAATAAAAAAGCTTCAGCACAAGATTCACTAAAAGGTGTTGTTGTAGCAAACTCATTAGGAGGAGCTGGTGAAGTGTTTCCTGTGGAAGAATATGCAGAGAAAGGAATGAAGAAGGATGAAGAAGAGAAAAAGAAGAACATGGAAGAAGTTTAA 798 0.3709 MAISHSTLAFAFGMLGNVISFMVFLAPITTFYRIYKKKSTEGFQSLPYLVALFSSMLWLYYALLKKHEFLLITINSFGCVVELMYIILYIIYATKDARKLSIKLVLAMNIGSFGLILLVTQYALHGPIRVEVLGWVCVSISVSVFAAPLTIVAQVIRTKSVEFMPFNLSFTLTLSAIMWFGYGLFLKDICIALPNVLGFVLGLVQMILYGIYRNGNKKASAQDSLKGVVVANSLGGAGEVFPVEEYAEKGMKKDEEEKKKNMEEV 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00029 265 PANTHER RAG1-ACTIVATING PROTEIN 1 14 252 IPR047664 -
Vifa1g00029 265 Gene3D - 11 99 - -
Vifa1g00029 265 Gene3D - 129 225 - -
Vifa1g00029 265 Pfam Sugar efflux transporter for intercellular exchange 11 96 IPR004316 GO:0016020
Vifa1g00029 265 Pfam Sugar efflux transporter for intercellular exchange 132 214 IPR004316 GO:0016020
Vifa1g00029 265 FunFam Bidirectional sugar transporter SWEET 10 98 - -
Vifa1g00029 265 FunFam Bidirectional sugar transporter SWEET 129 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00029 Vifa-Chr1 3708852 3710155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00029 3 243 Miscellaneous Gene Families AT5G13170 65.447 6.52e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00029 K15382 - gmx:100779335 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00029 1 3708852 3710155 Vifa1g00029 1 3708852 3710155 ECH