Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02560 ATGGGTTCTTGTCTTCTTGAGAAGACCGCTTTAAATGATCACGGAGACGAAACTGGAAAACTTCTCCTCTCTCTTGGCAAAATCCAGTTCAAACTCCACAAACTCATTGATCAATATCGTTCTCATATATTCCAGACAATTACCATTCCCTCCGAGTCTCTCTTGAATGAACTTCGAATTGTTGAGGAGATGAAACGACAATGCGACGAGAAAAGGGATGTATATGAGTATATGGTAACAAGATATAGAGAAGGAGGCAAGTCTAAAGGTGGGAAAGGAGAAACTTTCTCTTTGCAGCAGTTACAAACTGCTCATGATGAATATGATGAAGAGGCTACATTGTTTGTTTTCCGATTAAAATCTCTGAAGCAAGGACAATCCCGGAGTCTTCTAACACAAGCCGCACGTCACCATGCTGCTCAGTTATGTTTCTTCAAAAAAGCAATCAAGTCCCTTGAGACCGTAGAACCACATGTGAAATCAGTAACCGAACAGCAACACATTGATTACCACTTCAGTGGTCTtgaagaggaggctggggatgaaggtgattatggagatgatgatggtggtggttatgatgagcatgatgatgGGGAGTTGAGTTTTGACTATGGACAAAGTGAACAAGACCAGGATGTTTCTATATCACGAAACTCAATGGAGCTGGACCAGTTGGAACATACACTTCCTAGAGTTTCTACAGCTGAAGCTGCTAAGGAAAACTTGGATAAACTTCAAAGGAATTTGTTTTCCTTTAGGGTTAGGGCAGGAAGCCAATCTGCCCCACTTTTTGCTGATAATAAACCTGATTCAAGTGAAAAACTAAGACAGATGCGCCCATCTTTATCACGGAAGTTTAGTTCATATGTGCTACCCACACCAGTTGATGCGAAGAGTTCAACCTCTTCAGGGTCAAATAATCCAAACCCTTCCAAAATGCAGACAAATTTAAGTGAACCTGCGAAGAACTTGTGGCATTCATCCCCATTGGAACAAAAGAAACATGAAAAAGATATTGGAAATGAGTTTTCTGGTTCAATTGGCAGAAGTGCACAGTCAGTACTCAAGGAAAGTAACAGCAATACTGCCTCCACGAGATTGCTGCCTCCTTTGGTAGATAGTCTTTTATCCTCAAATCGGGATTACATTTCTGCTTACTCTAAAAAGACTAAAAGACAAGCCTTTTCTGGCCCATTAACAAGTAATCCTGGGCCTACCAAGCCGGTCTCGGTAGAAAGTGCTCAACTGTTCTCTGGACCTCTTTTGCCGACCCCAATCTCTCAGCCTCCATCTTCATCTCCAAAAGTATCTCCTAGTGCTTCTCCTACTCTTATGTCTTCACCCAAAATAAGTGAGCTTCATGAACTTCCTAGGCCTCCAACCAGTTTCCCCTCCAATTCAAGGCTTTTAGGTTTGGTGGGTCATTCTGGTCCATTGGTGTCTAGAGTTCAAAAGGTTTCCACTGCAAATAATTTGGTTGCATCAAGTGCAGCATCTCCACTCCCAATGCCACCTCAGGCCATGGCTCGTAGCTTCTCCATACCTTCTAGTGGCACTAGAGTTGCAGCATTACATGGGTCAAGAACGCTAAAATCCTCTAATAGATCATCTATATCTGAGAATATTGCTTCTCCTCCTCTGATGCCAATAGCATTATCTAGTAGTCAGCCATCATCAGATGGCTAA 1689 0.4056 MGSCLLEKTALNDHGDETGKLLLSLGKIQFKLHKLIDQYRSHIFQTITIPSESLLNELRIVEEMKRQCDEKRDVYEYMVTRYREGGKSKGGKGETFSLQQLQTAHDEYDEEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLCFFKKAIKSLETVEPHVKSVTEQQHIDYHFSGLEEEAGDEGDYGDDDGGGYDEHDDGELSFDYGQSEQDQDVSISRNSMELDQLEHTLPRVSTAEAAKENLDKLQRNLFSFRVRAGSQSAPLFADNKPDSSEKLRQMRPSLSRKFSSYVLPTPVDAKSSTSSGSNNPNPSKMQTNLSEPAKNLWHSSPLEQKKHEKDIGNEFSGSIGRSAQSVLKESNSNTASTRLLPPLVDSLLSSNRDYISAYSKKTKRQAFSGPLTSNPGPTKPVSVESAQLFSGPLLPTPISQPPSSSPKVSPSASPTLMSSPKISELHELPRPPTSFPSNSRLLGLVGHSGPLVSRVQKVSTANNLVASSAASPLPMPPQAMARSFSIPSSGTRVAALHGSRTLKSSNRSSISENIASPPLMPIALSSSQPSSDG 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02560 562 MobiDBLite consensus disorder prediction 262 318 - -
Cca07g02560 562 MobiDBLite consensus disorder prediction 176 214 - -
Cca07g02560 562 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 561 IPR037488 -
Cca07g02560 562 MobiDBLite consensus disorder prediction 282 318 - -
Cca07g02560 562 MobiDBLite consensus disorder prediction 390 414 - -
Cca07g02560 562 MobiDBLite consensus disorder prediction 179 195 - -
Cca07g02560 562 Coils Coil 236 256 - -
Cca07g02560 562 MobiDBLite consensus disorder prediction 527 562 - -
Cca07g02560 562 SUPERFAMILY BAR/IMD domain-like 2 161 IPR027267 -
Cca07g02560 562 Gene3D Arfaptin homology (AH) domain/BAR domain 4 179 IPR027267 -
Cca07g02560 562 MobiDBLite consensus disorder prediction 390 447 - -
Cca07g02560 562 CDD BAR 6 158 - -
Cca07g02560 562 PANTHER BNAA05G10100D PROTEIN 1 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02560 Cca-Chr7 54706385 54711349 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02560 - - gmx:100778278 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02560 07 54706385 54711349 Cca07g02560 07 54706385 54711349 ECH