Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1548 ATGAAAACTTCCCTCCGAAAGCTCCGCGGCTTCGCCCTCCACCGCCAAGACGTCCGCGAACGGAGAGTCGTGCAGCCTCTCGCGCAACTGGATGAGCTCGTTCAGGCCACGCAGGATATGCAAGACATGCGAAACTGCTATGATACCCTACTCTCTGCAGCTGCAGCGACTGCAAACAGTGCTTATGAATTCTCAGAATCATTGAAAGAACTGGGGGGTTGTCTTCTTGAGAAAACTGCATTGAATGAGGATGAAGAAAGTGGTAAAGTTTTGCTAAAGCTGGGAAAGGTGCAATATGAACTTCAGAAACTTGTAGATAGCTATCGCTCTCATATTTTCCAGACAATTGTAACACCATCAGAGTCTCTTCTTAAGGAGCTTCGGACGGTTGAGGAGATGAAGCGACAATGTGATGAAAAAAGAGACGTATATGAATACATGATAACAAGACAAAGAGAAAAAGGGAGGTCAAGAAGCGGGAGAGGTGAAACTTTTTCTTCACACCAGGTGCAAGCGGCTTGTGATGAATATGATGAGGAGGCAACCTTATTTGTTTTCCGTTTGAAATCTTTGAAGCAAGGACAATCCCGTAGCCTTCTTACACAGGCTTCTAGGCACCATGCTGCTCAGTTGTCTTTCTTCAGAAAGGCTCTCAAGTCTCTTGAGGTAATTGAGCCGCATGTAAAATTGGTCACAGAACAGCAACATATTGATTACAAGTTCAGTGGACTAGAAGATGATGATTGGGATGATGGGGAAGATGATGACGACTATGATGGGCATGATGGGGACTTAAGTTTTGACTATGGACAAATTGATCATGAACAGGATTTTGTTTCTACAGCGAGAAACTCAATGGAGTTGGATCAGGAGGACCTTACATTTCCTCAAGTTGCAACAATGGATTCTGTGAAGTTGCAGGAAAATCTAGACAAAAGCTATGTGGATTCTTTTGCTATTAATAGTGAAAGCAGGAAAATCAGCCAATCTGCCCCACTTTTTGCTGAGAAGAAATTTGATTCTGCATGGATGAGAGAAATGCGGCCTCTGTCAACACGCAAGCTTCGGACCTATGTACTACCCACACCAGATGATACAAAGAGTTCAGCTCCTACAAGATCAGATAGTCCGGATTCTCGCCCAATACCCACAAGTTTGAGTGGTCGTCCTCACAATTTGTGGCATTCTTCCCCCTTGGAACCAAAGTATGAAAAGATTTTGGGAGATGACAAAGTTTTTGAATCTACTGCCATGAATGCACAGTCAGTACTCAAAGAGAGCAATACTAATCATGTGTCTAGTGGACTACCCCCTCCTTTGGTTGATGGGCTTCCATTTCGGATGATAAATTCAAGTGTTGTTTCTGATACTAAGAAGGTCAAAAGATACGCTTTTTCTGGTCCATTGACAAGGAACCCATGGTCAACCAAGCCTGGTTTGTCTGCCAGTGATCCTTTGGTCTCAGTGACACAACCCCAATTGTTTTCTGGACCCCTTTTGCGGAGTCAAATGCCGCATCTATCATCATCATCATCACCTCCAAGAGTATCTCCAATTGCTTCTCCCTTTTTGTCATCACCCAAAATAAATGAGCTTCATGAGCTTCCTAGGCCCCCTTCCAGTTTGACCTTGAAACCTTCAAGACCTTCAAGTTTGATAGGTCATTCTGCCCCCTTGGTTGCCAGTGGTCCCAACCTTTCTGCTACAAATAAATTGGTGGTGTCAAGTACAGCATCTCGGTTGCCATTACCTCTGCAAGCTGTTCCTCGCAGTCTCTCCACCCCCTCAAGTGGTCAGAAACTGAAGATACCACGTGTTTCTGGACCATCAGAAGCTCCTCAGAATTCAGAGATGGCTGAAAATGTCACTTCACCACCTCTAACACCAATTTCTTTATCAAACATCCAGCCGGCATCAACTTCTTCTGTCAATGATACTAGTCAACTTGGAGGTGCTGAATGA 1962 0.4444 MKTSLRKLRGFALHRQDVRERRVVQPLAQLDELVQATQDMQDMRNCYDTLLSAAAATANSAYEFSESLKELGGCLLEKTALNEDEESGKVLLKLGKVQYELQKLVDSYRSHIFQTIVTPSESLLKELRTVEEMKRQCDEKRDVYEYMITRQREKGRSRSGRGETFSSHQVQAACDEYDEEATLFVFRLKSLKQGQSRSLLTQASRHHAAQLSFFRKALKSLEVIEPHVKLVTEQQHIDYKFSGLEDDDWDDGEDDDDYDGHDGDLSFDYGQIDHEQDFVSTARNSMELDQEDLTFPQVATMDSVKLQENLDKSYVDSFAINSESRKISQSAPLFAEKKFDSAWMREMRPLSTRKLRTYVLPTPDDTKSSAPTRSDSPDSRPIPTSLSGRPHNLWHSSPLEPKYEKILGDDKVFESTAMNAQSVLKESNTNHVSSGLPPPLVDGLPFRMINSSVVSDTKKVKRYAFSGPLTRNPWSTKPGLSASDPLVSVTQPQLFSGPLLRSQMPHLSSSSSPPRVSPIASPFLSSPKINELHELPRPPSSLTLKPSRPSSLIGHSAPLVASGPNLSATNKLVVSSTASRLPLPLQAVPRSLSTPSSGQKLKIPRVSGPSEAPQNSEMAENVTSPPLTPISLSNIQPASTSSVNDTSQLGGAE* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1548 653 MobiDBLite consensus disorder prediction 500 519 - -
Vvi1g1548 653 SUPERFAMILY BAR/IMD domain-like 31 229 IPR027267 -
Vvi1g1548 653 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 642 IPR037488 -
Vvi1g1548 653 MobiDBLite consensus disorder prediction 586 653 - -
Vvi1g1548 653 CDD BAR 62 227 - -
Vvi1g1548 653 Gene3D Arfaptin homology (AH) domain/BAR domain 27 242 IPR027267 -
Vvi1g1548 653 Pfam BAR domain 30 226 IPR004148 GO:0005515|GO:0005737
Vvi1g1548 653 MobiDBLite consensus disorder prediction 589 653 - -
Vvi1g1548 653 MobiDBLite consensus disorder prediction 359 397 - -
Vvi1g1548 653 MobiDBLite consensus disorder prediction 362 392 - -
Vvi1g1548 653 MobiDBLite consensus disorder prediction 500 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1548 Vvi-Chr1 22185936 22196036 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1548 - - vvi:100254108 1229.16