Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00011 ATGTGGGGTGTAATAAAGCACAAGACTCAGAGCATTCGCCCTGCCTTCTCCGCTATCAGGCATTTTTCTTCTGCCGCCAAAGAGATCACTGTTCGAGAGGCTCTCAACACCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGAGAAGTATGGCCCTGAGAGGGTTCTCGATACCCCAATCACTGAGGCTGGGTTTGCTGGTATTGGAGTTGGTGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGACCATATTATTAATTCTGCTGCAAAATCCAATTACATGTCTGCTGGGCAAATATCTGTACCTATTGTTTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCCCAGCATTCTCAATGTTATGCATCTTGGTATGCTACATGCCCTGGGTTGAAAGTCCTAACACCGTATTCATCAGAAGATGCACGTGGTTTGCTTAAAGCTGCTATAAGGGACCCAGATCCTGTTGTTTTTCTTGAAAATGAGTTGCTGTATGGTGAGTCATTCCCTGTTTCAGCTGAAGCTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTAACTATTACAGCTTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGGCACTGGCTAAAGAAGGAATCAGTGCTGAGGTTATTAATTTGCGTTCAATCCGACCGCTGGATCGGGCCACGATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGGGCTGAAATCTGCACATCTGTCATTGAGGAGAGTTTTGGTTATCTTGACGCACCGGTTGAGAGAATTGCCGGGGCTGATGTCCCTATGCCATACGCAGCTAACCTGGAGAGAATGGCTGTCCCACAGATTGAAGATATTGTTCGAGCTGCGAAGAGAGCATGCCACAGATCGGTGCCTTTGGCTGCAGCTGCTTGA 1089 0.4702 MWGVIKHKTQSIRPAFSAIRHFSSAAKEITVREALNTALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYATCPGLKVLTPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEALDSSFCLPIGKAKIEREGKDVTITAYSKMVGYALKAAEALAKEGISAEVINLRSIRPLDRATINTSVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQIEDIVRAAKRACHRSVPLAAAA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00011 362 Gene3D - 221 353 IPR009014 GO:0003824
Viun5g00011 362 Gene3D - 28 220 - -
Viun5g00011 362 SUPERFAMILY TK C-terminal domain-like 217 352 IPR009014 GO:0003824
Viun5g00011 362 Pfam Transketolase, C-terminal domain 222 344 IPR033248 -
Viun5g00011 362 CDD TPP_PYR_E1-PDHc-beta_like 33 199 - -
Viun5g00011 362 SMART Transket_pyr_3 29 204 IPR005475 -
Viun5g00011 362 Pfam Transketolase, pyrimidine binding domain 28 203 IPR005475 -
Viun5g00011 362 FunFam Pyruvate dehydrogenase E1 component subunit beta 28 220 - -
Viun5g00011 362 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 28 208 IPR029061 -
Viun5g00011 362 PANTHER DEHYDROGENASE RELATED 21 353 IPR027110 GO:0004739|GO:0006086
Viun5g00011 362 FunFam Pyruvate dehydrogenase E1 beta subunit 221 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00011 Viun-Chr5 76008 81463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00011 23 353 Acyl Lipid Metabolism Gene Families AT1G30120 41.742 5.41e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00011 K00162 - gmx:100805001 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00011 5 76008 81463 Viun5g00011 5 76008 81463 ECH