Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03407 ATGACTCTTCAACGTGATTCTTGGGTTTTTGTTTTCGGACTCCTAGGTAATATCATCTCCGTTATGGTCTTCCTCGCCCCATTACCAACATTTTACCAAATCTACAAGAAGAAATCTACTCAAGGGTTTCAATCAGTCCCTTATGTTGTTGCATTGCTTAGTGCAATGCTTTGGATCTATTATGCAATTGTCAAAAGGGAACATAGCTTTCTTCTCCTCACAATTAATTCATTTGGACTTGTGGTGGAATCGGTTTACCTTGCAATTTTCCTAGTTTATGCATCAAATAAAGTTAGGCTTTCAACCTTCAAGCTCATTCTACTATTAAATGTATTTGGATTTGGAACAATGCTTATTTCAACCCTATGTCTAACAATGGGATCCAAACGTCTTTCTATTATTGGATGGATTTGTCTTGTTTTCAACATAACCGTATTTGCTTCACCTCTATGCATTATTAGACACGTAATAAAGACTAAAAGTGTTGCCTACATGCCACTTAGTTTGTCCTTCTTTTTGAGCTTAAATGCTATCATGTGGTTCTTCTATGGTTTTCTCATCAAAGACTATTACATTGCTCTTCCAAATACACTTGGATTTGTATTCGGTATAGTTCAAATGGTGATGTATTTGATTTATAGAAACTCAACTCAAGTGATGGTACAAGAAAAACCAACCAAGTTACATGAACAAAATGGTCATATTATTGATGTTGTGAAGATCATTGACACAAATCAAGGGGACAATAGTGGTGTTCTTCCTGTATCAACTATATGTGATGATCCAAATAGTGGAAAATAA 801 0.3508 MTLQRDSWVFVFGLLGNIISVMVFLAPLPTFYQIYKKKSTQGFQSVPYVVALLSAMLWIYYAIVKREHSFLLLTINSFGLVVESVYLAIFLVYASNKVRLSTFKLILLLNVFGFGTMLISTLCLTMGSKRLSIIGWICLVFNITVFASPLCIIRHVIKTKSVAYMPLSLSFFLSLNAIMWFFYGFLIKDYYIALPNTLGFVFGIVQMVMYLIYRNSTQVMVQEKPTKLHEQNGHIIDVVKIIDTNQGDNSGVLPVSTICDDPNSGK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03407 266 Gene3D - 128 227 - -
Vifa2g03407 266 PANTHER RAG1-ACTIVATING PROTEIN 1 14 224 IPR047664 -
Vifa2g03407 266 FunFam Bidirectional sugar transporter SWEET 10 99 - -
Vifa2g03407 266 Gene3D - 10 99 - -
Vifa2g03407 266 FunFam Bidirectional sugar transporter SWEET 130 222 - -
Vifa2g03407 266 Pfam Sugar efflux transporter for intercellular exchange 133 217 IPR004316 GO:0016020
Vifa2g03407 266 Pfam Sugar efflux transporter for intercellular exchange 11 97 IPR004316 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03407 Vifa-Chr2 982467636 982469481 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03407 1 241 Miscellaneous Gene Families AT5G50800 51.867 9.16e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03407 K15382 - gmx:100805676 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03407 2 982467636 982469481 Vifa2g03407 2 982467636 982469481 ECH
Vifa2g03407 2 982467636 982469481 Vifa2g03405 2 981619158 981620485 PCT