Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01399 ATGCTTATCACTCACCATACTTTGGCATTTGCATTTGGCATGCTGGGTAATGTCATTTCGTTCTTGGTATTCTTGGCTCCAGTGCCAACATTTTACCGGATATACAAGAAGAAATCAACGGAAAGTTTTCAGTCATTGCCTTACTTAGTAGCATTATTCAGTTCAATGCTTTGGCTGTACTATGCATGGCTGAAAAAAAATGCTGTTCTCCTAATCACCATTAACTCATTCGGATGTGTCATAGAGATCATATACATCGTCTTGTACATCACCTATGCAACCAGGGATGCTAGGAACTTGACCATCAAGCTATTTTCGGCGATGAACATGGGCTCCTTTGCTTTGATATTGATAGTCACAAACTTTGTCGTGCATGGTCCCCTTCGTGTGCAAGTTCTGGGATGGATTTGTGTTTCCATTTCAGTCAGTGTATTTGCAGCACCACTCAGCATTGTGGCGCAAGTTGTTCGCACGAAGAGTGTAGAGTTTATGCCTTTCAATTTGTCATTTACCCTTACATTGAGCGCCGTAATGTGGTTTGGTTATGGTCTCTTTCTGAAGGACATATGCATAGCTCTCCCGAATGTGCTTGGTTTTGTGCTGGGGTTGCTTCAGATGGTGCTGTACGGAATTTACAGAAAAGGAAATAAAAAGAGTAATAAAATGGAAAAGAATCCAGAAGAGGCACTGAAGAACATTGTTGTAGCGAGCCCGATGGGAACTGGAGAGGTGTTTCCCGTGGAGGAAGATGAAGAAGCCAAAAAGAGCCATCACGAGGAAAAGAAACAAGAGTGCGAGCGATTTCAAACTTACTGCTACGTTAGTTATTGCTTAGAATCAACATCAATGGCAATCAGCCACAGTACTTTGGCCTTTGCTTTCGGCATGCTAGGTAACGTCATTTCGTTCTTGGTATTCTTGGCTCCAATAACAACATTTTACCGAATAGTGAAGAAGAAATCAACCGAGGGGTTTCAGTCACTGCCATACCTGGTGGCATTGTTCAGTTCAATGCTTTGGTTATACTATGCCTTACTAAAAAAAGACGCTTTTCTTCTCTTGACCATTAACTCATTTGGATGTGTGATTGAGATCATCTACATCATCTTGTACATCACCTATGCCACAAGGGATGCTAGGAAGCTAACTTTGAAGCTATTTTTGGCAATGAATGTGGGGTCCTTCGTTCTGATCCTCTTAGTCACACGTTTTGCTGTGCATGGTTCCCTCCGTGTCCAAGTTCTTGGATGGATATGTGTTTCTCTTTCGATTAGCGTCTTTGCAGCACCACTCAGCATTGTGGCACAAGTTGTTCGGACAAGGAGTGTTGAATTTATGCCTTTCAATCTGTCATTCACCCTCACATTGAGTGCCATAATGTGGTTTGGTTATGGTCTCTTTCTCAAGGACATATGCATTGCTCTTCCAAATGTACTTGGTTTTGCACTGGGATTAATTCAGATGGTGCTTTATGCCATTTACCGGAATGGCAATAAGAAGGTTGATAAAATGCAAAAGAAGGCACATATAGAGCAACCGAAAAGCGTTGTTATATCTAGCGCTGAAGCTTTGGAAAATGGTGAGGTGTTTCAGGTGGAGGAAAACGAGCAAGGACAGAAGAAGGAAGAGACTATGGCGGAGAAGGAGAGAAGTGATGAACCTAACGATTGCAGGGTCTAA 1680 0.4232 MLITHHTLAFAFGMLGNVISFLVFLAPVPTFYRIYKKKSTESFQSLPYLVALFSSMLWLYYAWLKKNAVLLITINSFGCVIEIIYIVLYITYATRDARNLTIKLFSAMNMGSFALILIVTNFVVHGPLRVQVLGWICVSISVSVFAAPLSIVAQVVRTKSVEFMPFNLSFTLTLSAVMWFGYGLFLKDICIALPNVLGFVLGLLQMVLYGIYRKGNKKSNKMEKNPEEALKNIVVASPMGTGEVFPVEEDEEAKKSHHEEKKQECERFQTYCYVSYCLESTSMAISHSTLAFAFGMLGNVISFLVFLAPITTFYRIVKKKSTEGFQSLPYLVALFSSMLWLYYALLKKDAFLLLTINSFGCVIEIIYIILYITYATRDARKLTLKLFLAMNVGSFVLILLVTRFAVHGSLRVQVLGWICVSLSISVFAAPLSIVAQVVRTRSVEFMPFNLSFTLTLSAIMWFGYGLFLKDICIALPNVLGFALGLIQMVLYAIYRNGNKKVDKMQKKAHIEQPKSVVISSAEALENGEVFQVEENEQGQKKEETMAEKERSDEPNDCRV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01399 559 MobiDBLite consensus disorder prediction 534 559 - -
Vimu6g01399 559 PANTHER RAG1-ACTIVATING PROTEIN 1 14 226 IPR047664 -
Vimu6g01399 559 Pfam Sugar efflux transporter for intercellular exchange 131 214 IPR004316 GO:0016020
Vimu6g01399 559 Pfam Sugar efflux transporter for intercellular exchange 293 377 IPR004316 GO:0016020
Vimu6g01399 559 Pfam Sugar efflux transporter for intercellular exchange 11 95 IPR004316 GO:0016020
Vimu6g01399 559 Pfam Sugar efflux transporter for intercellular exchange 413 496 IPR004316 GO:0016020
Vimu6g01399 559 FunFam Bidirectional sugar transporter SWEET 10 98 - -
Vimu6g01399 559 FunFam Bidirectional sugar transporter SWEET 292 380 - -
Vimu6g01399 559 Gene3D - 293 381 - -
Vimu6g01399 559 Gene3D - 11 97 - -
Vimu6g01399 559 Gene3D - 411 511 - -
Vimu6g01399 559 Gene3D - 129 227 - -
Vimu6g01399 559 MobiDBLite consensus disorder prediction 532 559 - -
Vimu6g01399 559 FunFam Bidirectional sugar transporter SWEET 129 221 - -
Vimu6g01399 559 FunFam Bidirectional sugar transporter SWEET 411 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01399 Vimu-Chr6 13524926 13533517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01399 285 555 Miscellaneous Gene Families AT5G13170 60.145 9.52e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01399 K15382 - gmx:100800528 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01399 6 13524926 13533517 Vimu6g01399 6 13524926 13533517 ECH