Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00005 ATGTTGGGTGTTGTAAGAAACAAGACTATTCGCCCTTCCTTCTCCGCATTCAGATTTCTATCTTCTTCAGCTAAACAGATGACAGTGAGAGATGCTCTTAATTCTGCACTTGATGAAGAAATGTCAGCTGATTCTAAAGTTTTTTTGATGGGTGAAGAGGTTGGAGAATATCAAGGTGCTTATAAGATTACCAAGGGATTGTTAGAGAAGTATGGTCCTGAAAGGGTTCTCGACACTCCCATCACCGAGGCTGGGTTTACTGGGATCGGAGTTGGTGCTGCTTACTATGGTCTAAAGCCTGTTGTGGAGTTTATGACATTTAACTTCTCCATGCAGGCAATAGATCACATCATTAATTCTGCTGCAAAATCAAATTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGAGTCGGTGCTCAGCACTCTCATTGTTATGCATCTTGGTATGGCTCATGCCCTGGGTTGAAAGTTTTGGCACCATATTCAGCTGAAGATGCCCGTGGTTTACTTAAAGCTGCTATTAGGGACCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTGTTATATGGTGAATCATTCCCTGTTTCTGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATTGGAAAAGCAAAGATTGAGAGAGAAGGAAAAGATGTGACTATTACAGCCTTCTCAAAAATGGTTGGCTTTGCTCTAAAGGCTGCTGAGATACTTGAAAAGGAAGGAATCAGTGCCGAGGTTATTAATCTACGGTCAATCAGGCCACTTGATCGACCCACCATCAATGCTTCCGTAAGGAAAACCAACAGATTGGTAACAGTTGAAGAAGGGTTTCCTCAGCACGGTGTTGGCGCTGAAATCTGTACTTCTGTCATCGAGGAAAGTTTTGGCTATCTTGATGCACCGGTTGAGAGAATTGCTGGCGCCGATGTTCCCATGCCTTATGCAGCTAATCTCGAGAGATTGGCTGTCCCACATGTTGAAGATATCGTTCGTGCTGCAAAGAGAGCATGCCACAGATCTGTGCCTTTGGCCGCAGCTGCCTAA 1083 0.4423 MLGVVRNKTIRPSFSAFRFLSSSAKQMTVRDALNSALDEEMSADSKVFLMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSHCYASWYGSCPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERLAVPHVEDIVRAAKRACHRSVPLAAAA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00005 360 Pfam Transketolase, pyrimidine binding domain 26 201 IPR005475 -
Vivi6g00005 360 FunFam Pyruvate dehydrogenase E1 component subunit beta 26 218 - -
Vivi6g00005 360 CDD TPP_PYR_E1-PDHc-beta_like 31 197 - -
Vivi6g00005 360 SMART Transket_pyr_3 27 202 IPR005475 -
Vivi6g00005 360 FunFam Pyruvate dehydrogenase E1 beta subunit 219 351 - -
Vivi6g00005 360 SUPERFAMILY TK C-terminal domain-like 217 350 IPR009014 GO:0003824
Vivi6g00005 360 PANTHER DEHYDROGENASE RELATED 20 351 IPR027110 GO:0004739|GO:0006086
Vivi6g00005 360 Gene3D - 219 351 IPR009014 GO:0003824
Vivi6g00005 360 Pfam Transketolase, C-terminal domain 220 342 IPR033248 -
Vivi6g00005 360 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 25 230 IPR029061 -
Vivi6g00005 360 Gene3D - 26 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00005 Vivi-Chr6 299410 303940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00005 21 351 Acyl Lipid Metabolism Gene Families AT1G30120 40.483 2.31e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00005 K00162 - gmx:100805001 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00005 6 299410 303940 Vivi6g00005 6 299410 303940 ECH