Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0473 ATGACTCATCACAACACTCCTATGATTTTTGCCGTTGGGATTCTAGGTAACATTGCCTCCTTCTTTTGCTTTCTAGCACCTGTGCCGATATTCTATCGAGTTTGTAAGAAGAAAACAACTGAAGGGTTCCAATCGGTTCCATATGTGGCTGCACTCTTCAGCGCAATGCTTTGGATCTTCTACGCTTACATAAAGACGGGTGAAATGCTCATCATCACCATCAATTCATTCGGTTGCATGATAGAAACAATTTACTTGGCCATCTATCTCAGTTACTGCCCCAAGAAAGCAAGGAGCTTCACATTGAAGATGATTTTCTTGTGCAACTTGTTGGGGATTTGTTTGGTTGTTGTTCTAACCCACGTTCTAGCAAAAGAACGAACAGCCCGTGTGGAGCTTCTTGGATGGATTTGTGTTGTTCTTTCTACTGCTGTTTTTGCAGCACCTCTAAGCATCATTAAAGTGGTTATTCGCACAAAGAGTGTGGAGTTCATGCCTTTCACTCTTTCACTCCTCCTCACCATAAGTGCAGTCATGTGGCTGTCGTACGGTATTCTCCTCAAAGATATCTTTGTTACACTTCCGAACATAGTGGGAATCACGTTTGGATCGATTCAGATGGTGCTGTATGGAATATACAGAAAAAACACACCTGTAAAAGATCAAAAGCTGCCAGAACACAAAGGAAACATCATCAATGGTGAAAACATGACCAATACAACTTTGAGTGATGAAAATCAAAAGGAATTTGTTGAGATAGAGATTGGAGAGAAGAAGGAGAAGGAAGAGAAGCCTGTTCATGGAACTGAAGAGAAGAAACAAGACCAAACCGAGAACAACATCGGCAACAAAACAAGGGAAGGCAATAATCAACTACAACAAAATTAA 888 0.4099 MTHHNTPMIFAVGILGNIASFFCFLAPVPIFYRVCKKKTTEGFQSVPYVAALFSAMLWIFYAYIKTGEMLIITINSFGCMIETIYLAIYLSYCPKKARSFTLKMIFLCNLLGICLVVVLTHVLAKERTARVELLGWICVVLSTAVFAAPLSIIKVVIRTKSVEFMPFTLSLLLTISAVMWLSYGILLKDIFVTLPNIVGITFGSIQMVLYGIYRKNTPVKDQKLPEHKGNIINGENMTNTTLSDENQKEFVEIEIGEKKEKEEKPVHGTEEKKQDQTENNIGNKTREGNNQLQQN* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0473 295 Pfam Sugar efflux transporter for intercellular exchange 11 97 IPR004316 GO:0016021
Lja4g0473 295 Pfam Sugar efflux transporter for intercellular exchange 133 216 IPR004316 GO:0016021
Lja4g0473 295 MobiDBLite consensus disorder prediction 224 295 - -
Lja4g0473 295 MobiDBLite consensus disorder prediction 247 280 - -
Lja4g0473 295 PANTHER RAG1-ACTIVATING PROTEIN 1 5 288 - -
Lja4g0473 295 MobiDBLite consensus disorder prediction 232 246 - -
Lja4g0473 295 Gene3D - 128 223 - -
Lja4g0473 295 MobiDBLite consensus disorder prediction 281 295 - -
Lja4g0473 295 Gene3D - 9 98 - -
Lja4g0473 295 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 5 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0473 Lja-Chr4 3871343 3873318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0473 4 239 Miscellaneous Gene Families AT5G23660 54.098 2.39e-87 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0473 K15382 - gmx:100801430 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4342 1 56096151 56098412 Lja4g0473 4 3871343 3873318 ECH
Lja4g0473 4 3871343 3873318 Lja4g0473 4 3871343 3873318 ECH
Lja4g0473 4 3871343 3873318 Lja1g4342 1 56096151 56098412 PCT