Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00033 ATGTGGGGTGTTATTAGGCACAAGAGTATCCGCCCTGCCTTCTCAACAATCAGACATTTCTCTTCTGCTGCTAAAGAGATGACAGTGAGAGAGGCTCTTAACTCCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTGGAAAAGTATGGCCCCGAGAGGGTTCTGGATACTCCAATCACAGAGGCTGGGTTTACCGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACATTTAATTTCTCCATGCAGGTTAGAGTTTATCCTGATTGCGTCCTTTCTTTCTTAAACTGA 378 0.4656 MWGVIRHKSIRPAFSTIRHFSSAAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQVRVYPDCVLSFLN. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00033 125 Gene3D - 23 114 - -
Seca2g00033 125 Pfam Transketolase, pyrimidine binding domain 26 117 IPR005475 -
Seca2g00033 125 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 25 112 IPR029061 -
Seca2g00033 125 PANTHER DEHYDROGENASE RELATED 19 112 IPR027110 GO:0004739|GO:0006086
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00033 Seca-Chr2 588840 590687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00033 5 109 Acyl Lipid Metabolism Gene Families AT1G30120 51.376 1.11e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00033 K00162 - gmx:100805001 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00033 2 588840 590687 Seca2g00033 2 588840 590687 ECH