Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00004 ATGGAGTCAAGTCCAACCACACTTTTTCATCTTGTTACAATTTGTACTATTCTCTTACTAGCCAATGCAAACTCTGAAGGTGATGCCTTGTACGCATTCAGAAGAGCTGTGAAAGATCCAAACAACATTCTACAGAGTTGGGACCCTACTCTGGTTGATCCTTGTACATGGTTTCATGTTACCTGTGATTCTCATAACAGGGTTACTAGATTGGACCTTGGACATGCAAAACTGTCCGGCCGTTTGGTTCCTGAACTAGGGAGCCTCCATCACCTTCAGTTTCTAGAATTGTACAGGAATGAACTGGTGGGTCCAATACCAAAGGAAATTGGAAATTTGAAGAACTTGGTTAGCTTGGGTCTTTACCATAACAATCTCACTGATTCTATTCCTCCCACACTCTCCAACCTCTCTAATATCAAATTCTTGAGACTCAACAACAACAAGTTGACAGGAAGAATACCAAGGAAACTCACTAAACTGAAAAACCTAAAGATCCTAGACCTGTCAAACAATGATCTCTGTGGTACCTTTCCCACATACGGCTCCTTCTCCAAATTCTCGCAACAAAGTTTCAAGGACAACCCAAGACTTACAGGTCCAGAGTTGATGGGATTTGTGAGATATGATGATATTGGAGGAAGCTGCAAATGA 654 0.4159 MESSPTTLFHLVTICTILLLANANSEGDALYAFRRAVKDPNNILQSWDPTLVDPCTWFHVTCDSHNRVTRLDLGHAKLSGRLVPELGSLHHLQFLELYRNELVGPIPKEIGNLKNLVSLGLYHNNLTDSIPPTLSNLSNIKFLRLNNNKLTGRIPRKLTKLKNLKILDLSNNDLCGTFPTYGSFSKFSQQSFKDNPRLTGPELMGFVRYDDIGGSCK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00004 217 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Vivi6g00004 217 FunFam Somatic embryogenesis receptor kinase 1 22 208 - -
Vivi6g00004 217 Gene3D Ribonuclease Inhibitor 22 205 IPR032675 -
Vivi6g00004 217 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 191 - -
Vivi6g00004 217 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Vivi6g00004 217 SUPERFAMILY L domain-like 25 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00004 Vivi-Chr6 289621 291230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00004 1 201 Receptor kinase-like Gene Family AT1G71830 57.561 2.55e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00004 - - cam:101510664 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00004 6 289621 291230 Vivi6g00004 6 289621 291230 ECH