Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1545 ATGAAAGCCAAGGCTTCGGCAGCTGGAAAACGGGTGCCCACAGGCCTCCAGACCAAGTCCTCGAGTGCCCTAATCTCTCTCGCTGTCTCTTTTCATTTCACAATGACGAAGCAGCAAGCTAACTGGTCTCTTTACAACAACAATGGAGGATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCACATCCGGTACTCGGATGTCGATCGGCTACAATATCCTCACTTGTGATTACTCTAAAATCTGCAAATTAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGACAGTTGATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTTTTAACGTTTTAGGTGGCCTTGATAATGAAGGAAAGGGTTGGGTCTTACCCAGATGTTGCCACCCACTAAGCCCATTTCCAAAGCCCACTTACTCCTTTTGTTTATTCATCTCCATGCATGCACACATCAGAATGTATTAA 579 0.4508 MKAKASAAGKRVPTGLQTKSSSALISLAVSFHFTMTKQQANWSLYNNNGGSCVAIAGADYCVITSGTRMSIGYNILTCDYSKICKLADKCVMASSGFQADVRALQKHLAARQLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGWVLPRCCHPLSPFPKPTYSFCLFISMHAHIRMY* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1545 192 PANTHER METALLOPROTEASE TLDD 37 162 IPR023333 -
Vvi1g1545 192 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 42 169 IPR029055 -
Vvi1g1545 192 Pfam Proteasome subunit 47 158 IPR001353 GO:0005839|GO:0051603
Vvi1g1545 192 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 45 161 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1545 Vvi-Chr1 22117367 22118070 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1545 K02732 - vvi:100247145 278.1