Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02559 ATGGAAAGAACGGCAAGCCTCGTGCACCTACCGCTCTGGATTCTCGAGTTGACGCATATATGCTACTGGTGTATCTCTTTAAGCGACTGGCGATCGGATCCAGCTACTGATCAAGGAGGCAACATGTGGGGTGTTATGAGGCACAGGAGTATTCGCCCTGCCATCTCCGCATTCAGATATTTCTCTTCTGCCGCCAAAGAGATTACTGTGAGGGAGGCTCTGAACACCGCCCTCGATGAGGAGATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGAGAAGTATGGCCCCGAAAGGGTTCTCGATACTCCAATCACTGAGGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCATACTATGGTCTAAGGCCTGTTGTGGAATTTATGACTTTTAACTTCTCCATGCAGGCAATAGATCATATTATTAATTCTGCTGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAGCATTCTCAATGTTATGCATCTTGGTATGGTGCATGCCCTGGGTTGAAAGTCTTGACACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCAGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCTGTTACAGCCGAAGCTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGCGGGAAGGAAAAGATGTGACTATTACAGCTTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGGTTATTAATTTGCGTTCTATCCGACCGCTTGATCGGTCCACAATCAATAATTCTGTAAGGAAAACAAATAGGCTGGTAACTGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGTGCTGAAATATGCACATCTGTCATTGAGGAGAGTTTTGGTTATCTCGATGCACCTGTTGAGAGAATTGCTGGGGCTGACGTTCCTATGCCTTATGCAGCAAATCTGGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCTACAGATCTGTGCCTTTGGCTGCAGCTGCTTGA 1206 0.4643 MERTASLVHLPLWILELTHICYWCISLSDWRSDPATDQGGNMWGVMRHRSIRPAISAFRYFSSAAKEITVREALNTALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYGACPGLKVLTPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVTAEALDSSFCLPIGKAKIEREGKDVTITAYSKMVGYALKAAETLAKEGISAEVINLRSIRPLDRSTINNSVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02559 401 PANTHER DEHYDROGENASE RELATED 63 396 IPR027110 GO:0004739|GO:0006086
Cca07g02559 401 Gene3D - 67 259 - -
Cca07g02559 401 SMART Transket_pyr_3 68 243 IPR005475 -
Cca07g02559 401 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 246 IPR029061 -
Cca07g02559 401 Pfam Transketolase, C-terminal domain 261 383 IPR033248 -
Cca07g02559 401 Gene3D - 260 392 IPR009014 GO:0003824
Cca07g02559 401 SUPERFAMILY TK C-terminal domain-like 256 390 IPR009014 GO:0003824
Cca07g02559 401 Pfam Transketolase, pyrimidine binding domain 67 242 IPR005475 -
Cca07g02559 401 CDD TPP_PYR_E1-PDHc-beta_like 72 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02559 Cca-Chr7 54674034 54682673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02559 62 391 Acyl Lipid Metabolism Gene Families AT1G30120 42.470 1.85e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02559 K00162 - gmx:100817577 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02559 07 54674034 54682673 Cca07g02559 07 54674034 54682673 ECH