Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1549 ATGGCGATCTGGGCTCAGTATCATCATCTTCTAGCCCTTTTTCTCCTAACATGGGCATCTACAGTGCCCACAAATGCAAACATGGAAGGAGATGCCTTGTATGCATTGAGGAGAGCAGTGGAGGACCCAGAGCATGTTCTACAGAGCTGGGATCCAACTTTGGTGGATCCCTGTACATGGTTTCATGTCACTTGTGACTCAGACAACAGAGTCACCAGACTTGACCTTGGAAATGCAAAGCTATCAGGCAATCTAGTTCCAGAGTTGGGGAAGCTTGAGCGTCTCCAGTATCTGGAACTCTATATGAACAACTTGGTGGGTCCAATACCAGTGCAACTTGGAGGACTCAAGAACCTAGTAAGCTTGGATCTGTTCCACAACAACCTCACTGGCTCAATCCCTCCATCACTCTCCAAGCTCTCCAATCTCAGATTCCTGAGACTGAACAGCAACAGGTTGAGTGGAACAATACCCAGAGAACTTACCAAGCTTGGAAGCCTTAAGATCCTTGATGTGTCAAACAACGATTTGTGTGGCACAATCCCAACCACTGGTTCCTTCTCCAAGTTCTCAGAGGAAAGTTTTATGAATAACCCAAGATTGGAAGGGCCAGAGCTGATGGGGTTTGTAAGATATGACACGAGAGGAGGCTGCAAGTGA 660 0.4712 MAIWAQYHHLLALFLLTWASTVPTNANMEGDALYALRRAVEDPEHVLQSWDPTLVDPCTWFHVTCDSDNRVTRLDLGNAKLSGNLVPELGKLERLQYLELYMNNLVGPIPVQLGGLKNLVSLDLFHNNLTGSIPPSLSKLSNLRFLRLNSNRLSGTIPRELTKLGSLKILDVSNNDLCGTIPTTGSFSKFSEESFMNNPRLEGPELMGFVRYDTRGGCK* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1549 219 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 191 - -
Vvi1g1549 219 Gene3D Ribonuclease Inhibitor 25 208 IPR032675 -
Vvi1g1549 219 PRINTS Leucine-rich repeat signature 119 132 - -
Vvi1g1549 219 PRINTS Leucine-rich repeat signature 164 177 - -
Vvi1g1549 219 Pfam Leucine Rich Repeat 166 182 IPR001611 GO:0005515
Vvi1g1549 219 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
Vvi1g1549 219 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Vvi1g1549 219 FunFam Somatic embryogenesis receptor kinase 1 25 211 - -
Vvi1g1549 219 SUPERFAMILY L domain-like 29 192 - -
Vvi1g1549 219 ProSiteProfiles Leucine-rich repeat profile. 118 141 IPR001611 GO:0005515
Vvi1g1549 219 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1549 Vvi-Chr1 22200872 22202301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1549 10 204 Receptor kinase-like Gene Family AT1G71830 62.051 9.37e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1549 - - vvi:100259228 434.491