Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1408 ATGTTCGGTGTAATAAAGCACAAGGCTCAGAGCATTCGCCCTGCCTTCTCCGCTATCAGACATTTTTCTTCTGCCGCCAAAGAGATCACTGTTCGAGAGGCTCTCAACACCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGAGAAGTATGGCCCTGAGAGGGTTCTCGATACCCCAATCACTGAGGCTGGGTTTGCTGGTATTGGAGTTGGTGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGACCATATTATTAATTCTGCCGCAAAATCCAATTACATGTCTGCTGGGCAAATATCTGTACCTATTGTTTTTAGAGGACCCAATGGTGCTGCCGCTGGGGTTGGTGCCCAGCATTCTCAATGTTATGCATCTTGGTATGCTTCATGCCCTGGGTTGAAAGTCCTGTCTCCGTATTCATCTGAAGATGCACGTGGTTTGCTTAAAGCTGCTATAAGGGACCCCGATCCTGTTGTTTTTCTTGAAAATGAGTTACTATATGGTGAGTCATTCCCTGTTTCGGCTGAAGCTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTAACTATTACAGCTTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCTAAAGAAGGAATCAGTGCCGAGGTTATTAATTTGCGTTCAATCCGACCATTGGATCGATCAACAATTAATGCTTCTGTCAGGAAAACCAACAGGCTAGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGGGCTGAAATCTGCACATCTGTCATTGAGGAGAGTTTTGGTTATCTTGACGCACCTGTTGAGAGAATTGCTGGGGCTGATGTTCCTATGCCATACGCAGCTAACCTGGAGAGATTGGCTGTTCCACAGATTGAAGATATTGTTCGAGCTGCGAAGAGAGCATGCCACAGATCGGTGCCTTTGGCTGCAGCTGCTTGA 1089 0.4619 MFGVIKHKAQSIRPAFSAIRHFSSAAKEITVREALNTALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYASCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEALDSSFCLPIGKAKIEREGKDVTITAYSKMVGYALKAAETLAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERLAVPQIEDIVRAAKRACHRSVPLAAAA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1408 362 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 28 208 IPR029061 -
Vra4g1408 362 CDD TPP_PYR_E1-PDHc-beta_like 33 199 - -
Vra4g1408 362 Pfam Transketolase, C-terminal domain 222 344 IPR033248 -
Vra4g1408 362 Gene3D - 221 353 IPR009014 GO:0003824
Vra4g1408 362 Gene3D - 28 220 - -
Vra4g1408 362 PANTHER DEHYDROGENASE RELATED 24 357 IPR027110 GO:0004739|GO:0006086
Vra4g1408 362 SUPERFAMILY TK C-terminal domain-like 217 352 IPR009014 GO:0003824
Vra4g1408 362 Pfam Transketolase, pyrimidine binding domain 28 203 IPR005475 -
Vra4g1408 362 SMART Transket_pyr_3 29 204 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1408 Vra-Chr4 20769862 20775363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1408 23 353 Acyl Lipid Metabolism Gene Families AT1G30120 42.342 2.09e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1408 K00162 - gmx:100817577 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1408 4 20769862 20775363 Vra4g1408 4 20769862 20775363 ECH