Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06414 ATGGCCATGCATCGTGAATCTTGGGCTTTTGTCTTCGGCCTTCTAGGCAACATCATCTCCTTTATGGTGTTCCTTGCTCCATTGCCAACCTTTTACCAAATCTACAAGAAGAAATCTACTGAAGGGTTTCAGTCACTTCCTTATGTGGTTGCACTTTTCAGTGCAATGCTTTGGATTTACTATGCATTTGTGAAAAGGGAAGCTGCCCTCCTCCTCATCACCATTAACACATTTGGAATTGTTGTAGAGTCAGCTTACCTTATTGTCTTCCTCCTTTATGCCACAAAGAAGTCTAGGCTTTCAACCATAAAACTTCTTCTGTTGCTGAATGTGTTTGGATTCGGAGCCATGCTTCTTTCAACTCTCTACCTGTCCAAGGGAGCAAAGCGTCTCGCCATTATAGGATGGATTTGCCTCGTTTTCAACATCAGTGTCTTTGCTGCACCTCTCTTCATCATTGTAATTAACTAA 471 0.4225 MAMHRESWAFVFGLLGNIISFMVFLAPLPTFYQIYKKKSTEGFQSLPYVVALFSAMLWIYYAFVKREAALLLITINTFGIVVESAYLIVFLLYATKKSRLSTIKLLLLLNVFGFGAMLLSTLYLSKGAKRLAIIGWICLVFNISVFAAPLFIIVIN. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06414 156 Gene3D - 11 99 - -
Seca12g06414 156 Pfam Sugar efflux transporter for intercellular exchange 11 97 IPR004316 GO:0016020
Seca12g06414 156 FunFam Bidirectional sugar transporter SWEET 10 99 - -
Seca12g06414 156 PANTHER RAG1-ACTIVATING PROTEIN 1 14 153 IPR047664 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06414 Seca-Chr12 156157928 156159984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06414 1 153 Miscellaneous Gene Families AT5G50800 62.745 5.30e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06414 K15382 - gmx:100810946 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06414 12 156157928 156159984 Seca12g06414 12 156157928 156159984 ECH
Seca12g06414 12 156157928 156159984 Seca12g06414 12 156157928 156159984 PCT