Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1546 ATGTTGGGGATTGTGAGTCGGAAGGTTTTGGGGCAGTCGTTGGGGAGGATTAGGCCTGCGGTGTGGGCATTGAGGAACTACTCGTCTGCGGAAAAACAGATGACAGTGAGGGATGCTCTAAACTCTGCACTTGATGAGGAAATGTCCGCAGATCCTAAAGTCTTTTTGATGGGTGAAGAGGTCGGGGAATACCAAGGTGCATACAAGATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCTGGTCAGATATCCGTACCTATTGTTTTTAGAGGACCAAATGGTGCTGCCGCTGGAGTTGGTGCCCAGCACTCCCAGTGTTATGCAGCCTGGTATGGCTCCTGCCCTGGGTTGAAAGTGCTGTCCCCATATTCATCTGAGGATGCCCGTGGATTGCTAAAAGCTGCTATAAGAGACCCTGATCCTGTTATTTTCCTTGAAAATGAGTTGCTGTATGGTGAATCTTTCCCTATCTCAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTGGGCTTTGCACTCAAGGCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCCTCAGTCAGGAAAACTAACAGACTTGTAACCGTTGAAGAAGGGTTCCCTCAGCATGGTGTTGGGGCTGAGATCTGCATGGCTGTTGTTGAGGAGAGCTTTGGTTATCTTGATGCACCAGTGGAAAGGATTGCCGGGGCTGATGTTCCCATGCCTTATGCTGCTAATCTCGAGAGAATGGCTGTCCCACAGATTGAAGATATCGTCCGAGCTGCAAAGAGAGCATGCTACAGATCCACTGCAATGGCTGCAACTGCTTGA 1104 0.4737 MLGIVSRKVLGQSLGRIRPAVWALRNYSSAEKQMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLSPYSSEDARGLLKAAIRDPDPVIFLENELLYGESFPISAEVLDSSFCLPIGKAKIEREGRDVTITAFSKMVGFALKAADILAKDGISAEIINLRSIRPLDTPTINASVRKTNRLVTVEEGFPQHGVGAEICMAVVEESFGYLDAPVERIAGADVPMPYAANLERMAVPQIEDIVRAAKRACYRSTAMAATA* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1546 367 FunFam Pyruvate dehydrogenase E1 component subunit beta 33 225 - -
Vvi1g1546 367 FunFam Pyruvate dehydrogenase E1 beta subunit 226 358 - -
Vvi1g1546 367 SUPERFAMILY TK C-terminal domain-like 222 356 IPR009014 GO:0003824
Vvi1g1546 367 SMART Transket_pyr_3 34 209 IPR005475 -
Vvi1g1546 367 Gene3D - 226 358 IPR009014 GO:0003824
Vvi1g1546 367 Gene3D - 33 225 - -
Vvi1g1546 367 Pfam Transketolase, C-terminal domain 227 349 IPR033248 -
Vvi1g1546 367 CDD TPP_PYR_E1-PDHc-beta_like 38 204 - -
Vvi1g1546 367 PANTHER DEHYDROGENASE RELATED 26 359 IPR027110 GO:0004739|GO:0006086
Vvi1g1546 367 Pfam Transketolase, pyrimidine binding domain 33 208 IPR005475 -
Vvi1g1546 367 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 32 212 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1546 Vvi-Chr1 22123684 22131169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1546 28 357 Acyl Lipid Metabolism Gene Families AT1G30120 40.909 1.03e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1546 K00162 - vvi:100264409 721.079