Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2810 ATGTGGGGTGTGATAAGGCACAAGAGTATTCGTCCTACCTTCTCCGCATTCAGACATTTCTCTTCTGCCGCTAAAGAGATAACAGTGAGAGAGGCTCTCAACTCCGCACTCGATGAGGAAATGTCAGCTGATCCAAAAGTCTTCTTGATGGGTGAAGAGGTGGGGGAATATCAGGGTGCATACAAGATATCCAAGGGACTCCTGGAGAAGTATGGTCCCGACAGGGTTCTCGACACCCCAATCACCGAGGCTGGGTTTGCCGGGATTGGAGTTGGTGCTGCATATTATGGTCTAAGACCTGTTGTGGAGTTTATGACATTTAACTTCTCCATGCAGGCAATAGATCACATTATTAATTCTGCTGCAAAATCAAATTACATGTCTGCTGGCCAAATATCTGTGCCTATTGTCTTTAGAGGACCCAACGGTGCTGCTGCTGGGGTTGGTGCTCAGCACTCTCAATGTTATGCATCTTGGTATGGTTCATGCCCTGGGTTAAAAGTCTTATCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATACGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCTGTTTCAGCCGAAGCTCTTGATTCCAGCTTTTGCCTATCCATAGGAAAAGCAAAGATTGAGAGAGAAGGAAAAGATGTGACTATCACAGCCTTTTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGGTTATTAATTTGCGGTCAATCCGGCCGCTTGATCGATCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGCGCAGAAATCTGCGCATCTGTCATTGAGGAGAGTTTTGGTTATCTTGATGCTCCAGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCCTATGCAGCAAATCTGGAAAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCTTGCTACAGATCTGTGCCTTTGGCTGCAGCTGCTTGA 1083 0.4635 MWGVIRHKSIRPTFSAFRHFSSAAKEITVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPDRVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYGSCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEALDSSFCLSIGKAKIEREGKDVTITAFSKMVGYALKAAETLAKEGISAEVINLRSIRPLDRSTINTSVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2810 360 Pfam Transketolase, pyrimidine binding domain 26 201 IPR005475 -
Apr4g2810 360 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 26 206 IPR029061 -
Apr4g2810 360 SUPERFAMILY TK C-terminal domain-like 217 349 IPR009014 GO:0003824
Apr4g2810 360 Gene3D - 219 351 IPR009014 GO:0003824
Apr4g2810 360 CDD TPP_PYR_E1-PDHc-beta_like 31 197 - -
Apr4g2810 360 Gene3D - 26 218 - -
Apr4g2810 360 PANTHER DEHYDROGENASE RELATED 22 355 IPR027110 GO:0004739|GO:0006086
Apr4g2810 360 Pfam Transketolase, C-terminal domain 220 342 IPR033248 -
Apr4g2810 360 SMART Transket_pyr_3 27 202 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2810 Apr-Chr4 36645072 36650936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2810 21 350 Acyl Lipid Metabolism Gene Families AT1G30120 42.470 7.94e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2810 K00162 - gmx:100805001 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2810 4 36645072 36650936 Apr4g2810 4 36645072 36650936 ECH