Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0006 ATGTGGGGTGTTATAAGGCACAAGAGTATTCGCCCTACCTTCTCCGCATTCAGACGTTTCTCTGCTGCCGCTAAAGAGATGACTGTGAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGaTATCCAAGGGGCTGCTGGAGAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGATCATATTATTAACTCTGCAGCAAAATCAAACTATATGTCTGCTGGACAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAGCATTCTCAATGTTATGCATCTTGGTATGGTTCATGCCCTGGGTTGAAAGTCTTGTCACCATATACATCTGAAGATGCTCGTGGTTTGCTTAAAGCCGCTATAAGGGATCCTGATCCTGTTGTTTTCCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCCGTTTCAGCTGAAGCTGTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGAttgagagagaaggaaaagatGTGACTATTACAGCCTATTCAAAAATGGTTGGCTATGCTCTTAAGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGGTTATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATACTTCTGTCAGAAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGGGCTGAAATCTGCACATCTGTCATTGAGGAGAGTTTTGGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCGAATCTGGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCTACAGATCTGTTCCTTTGGCTGCAGCTGCTTGA 1083 0.4534 MWGVIRHKSIRPTFSAFRRFSAAAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYGSCPGLKVLSPYTSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEAVDSSFCLPIGKAKIEREGKDVTITAYSKMVGYALKAAETLAKEGISAEVINLRSIRPLDRSTINTSVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0006 360 Pfam Transketolase, C-terminal domain 220 342 IPR033248 -
Ssu3g0006 360 Gene3D - 26 218 - -
Ssu3g0006 360 SUPERFAMILY TK C-terminal domain-like 215 349 IPR009014 GO:0003824
Ssu3g0006 360 Gene3D - 219 351 IPR009014 GO:0003824
Ssu3g0006 360 PANTHER DEHYDROGENASE RELATED 15 355 IPR027110 GO:0004739|GO:0006086
Ssu3g0006 360 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 25 206 IPR029061 -
Ssu3g0006 360 CDD TPP_PYR_E1-PDHc-beta_like 31 197 - -
Ssu3g0006 360 SMART Transket_pyr_3 27 202 IPR005475 -
Ssu3g0006 360 Pfam Transketolase, pyrimidine binding domain 26 201 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0006 Ssu-Chr3 151904 156785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0006 21 350 Acyl Lipid Metabolism Gene Families AT1G30120 42.470 1.26e-92 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0006 K00162 - gmx:100777306 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0006 3 151904 156785 Ssu3g0006 3 151904 156785 ECH